Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq219401 95.1 9e-15 seq215899 93.3 3e-14 seq204705 87.8 1e-12 seq197745 86.0 5e-12 seq193485 84.2 2e-11 >seq219401 Length=2348 Score = 95.1 bits (104), Expect = 9e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | ||||||||| || || Sbjct 840 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 899 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||||||||||| ||||||||| || || Sbjct 900 GATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTT 959 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||| | || || || || || |||| || || || Sbjct 960 CTCGATCGTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1019 Query 48755 AAAAATCTGCATCGTGTGTA 48774 || |||||||||| ||||| Sbjct 1020 GAAGATCTGCATCGCGTGTA 1039 >seq215899 Length=7104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | ||| | || |||| || | |||| Sbjct 1446 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGC 1505 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | |||||||||||| ||||| Sbjct 1506 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1565 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | ||||| || || || ||| Sbjct 1566 TGCTTCACGTTCTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 1625 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || |||||||| || Sbjct 1626 AGGGTCTTCACGAAGATCTGCATTGT 1651 >seq204705 Length=1723 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | || | || |||| || | |||| Sbjct 1518 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 1459 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || || | ||| | |||||||||||| ||||| Sbjct 1458 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1399 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||||| | | | || || ||| ||||| | || || || || ||||| Sbjct 1398 TGCTTTACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCCGTG 1339 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGTGTA 48774 | || || ||||| |||||||||| ||||| Sbjct 1338 AGGGTCTTGACAAAGATCTGCATCGCGTGTA 1308 >seq197745 Length=2070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | |||||| ||||| || Sbjct 1653 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 1712 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| ||||| || || ||| Sbjct 1713 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATT 1772 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | || ||||| || || |||| || || || Sbjct 1773 CTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGAC 1832 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 1833 AAAGATCTGCAT 1844 >seq193485 Length=2074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | ||| |||| || | |||| Sbjct 1447 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 1388 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | |||||||||||| ||||||| Sbjct 1387 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1328 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | || || || || || || Sbjct 1327 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1268 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || || ||||| || Sbjct 1267 AGGGTCTTGACGAAGATTTGCATTGT 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379897004305251