Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq203116 210 4e-49 seq202680 210 4e-49 seq202679 210 4e-49 seq198733 210 4e-49 seq217546 178 2e-39 >seq203116 Length=2194 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 1013 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 954 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 953 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 896 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 895 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 836 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 835 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 779 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 778 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 722 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 721 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 662 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 661 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 602 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 601 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 543 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 542 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 483 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 482 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 445 >seq202680 Length=3004 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 2646 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 2587 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 2586 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 2529 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 2528 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 2469 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 2468 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 2412 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 2411 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 2355 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 2354 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 2295 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 2294 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 2235 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 2234 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 2176 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 2175 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 2116 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 2115 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 2078 >seq202679 Length=2935 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 2577 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 2518 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 2517 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 2460 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 2459 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 2400 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 2399 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 2343 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 2342 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 2286 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 2285 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 2226 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 2225 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 2166 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 2165 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 2107 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 2106 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 2047 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 2046 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 2009 >seq198733 Length=2163 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 1151 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 1210 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 1211 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 1268 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 1269 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 1328 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 1329 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 1385 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 1386 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 1442 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 1443 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 1502 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 1503 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 1562 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 1563 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 1621 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 1622 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 1681 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 1682 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 1719 >seq217546 Length=10770 Score = 178 bits (196), Expect = 2e-39 Identities = 452/678 (67%), Gaps = 35/678 (5%) Strand=Plus/Plus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGA--AG 221561 |||||||||||||| ||||| |||||||| |||||||||||||| | | |||| || | Sbjct 7992 AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTG 8051 Query 221562 CGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGA 221621 ||| || || |||||||| || |||||| |||||||| |||||||||||| |||| Sbjct 8052 CGG--GCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGA 8109 Query 221622 TGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 || || || || ||| |||||||||||| | | ||||||||| | ||| Sbjct 8110 CCACCTTCACGACGTCGTGCAGCTTCTGGTGGT------CAAACTCGCCG--TTGGTGAT 8161 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || | |||| | || | ||||||||| ||||||||||||||||| Sbjct 8162 GAACTTGGGC---AGCG---CGAGCGA----GGCCAGGTTGCACACGGCCACCTCGTCGG 8211 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || ||||| | || ||| || || ||||| ||| |||||| || ||||| | Sbjct 8212 GCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCT 8271 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 || || ||||||| ||| ||||||||||| ||||| |||| ||| ||||| | Sbjct 8272 GCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGA 8331 Query 221862 GCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC 221921 ||| | | | || || | ||| || || |||| || | || | | || | Sbjct 8332 TCTGCGACTCGAGGATGGCGAACCACAGCTC-CTGGGCCT---TGACCAC---GCGGCGC 8384 Query 221922 CCTCGG----TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCG 221977 | ||| || || || | || | || |||| | || ||| ||| Sbjct 8385 GCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCG 8444 Query 221978 TCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT-GCTTGTTGTCTTTGACCCT 222036 |||||| || | | ||| || | || ||||| || ||| | || | Sbjct 8445 AACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTC-TCCACGCG 8503 Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| || |||||||| | | |||||||| | || || | |||||| Sbjct 8504 CTTCATGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTC 8563 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| ||| |||| || | || ||||| ||||| |||||||| ||||| || Sbjct 8564 CTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAG 8623 Query 222157 ATAGACGGCCAGAGCGCC 222174 |||| ||| | ||| || Sbjct 8624 GTAGATGGCGAAAGCACC 8641 Score = 114 bits (126), Expect = 2e-20 Identities = 230/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | |||||| |||||| ||||| |||||| Sbjct 8868 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCC 8927 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | || Sbjct 8928 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGT 8987 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 8988 GCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 9046 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | ||||| | |||| || Sbjct 9047 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCA 9106 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || ||||| || || | Sbjct 9107 TGTGCTGGGGTCGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTAGGAGCGCTCGA 9163 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| ||||||||| || || ||||| Sbjct 9164 GGGTCTTGAAGCCAAAGTAGGTGTAGTTGAAGTC 9197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926242443913280