Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq217546 109 7e-19 seq203116 93.3 5e-14 seq202680 93.3 5e-14 seq202679 93.3 5e-14 seq198733 93.3 5e-14 >seq217546 Length=10770 Score = 109 bits (120), Expect = 7e-19 Identities = 851/1358 (63%), Gaps = 30/1358 (2%) Strand=Plus/Minus Query 75587 CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 |||||||| | |||| ||||| | || || ||||| || || ||| | || ||||| Sbjct 8647 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 8588 Query 75647 GAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCT 75705 || | | || ||||| || | || ||| || | |||||||| | ||| Sbjct 8587 GACCTGAAGAAG-AACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCT 8529 Query 75706 GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG 75765 ||||||||| ||||| ||||||||||| || ||| ||| || | ||||| || || || Sbjct 8528 GTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTG 8469 Query 75766 TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACAC 75825 || || |||| || || || | |||| || ||| ||||||| || | ||| Sbjct 8468 CCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGA 8409 Query 75826 AAAGTATGAAGAGGAGGGTAGAGC-CAATGCGACTGTACCA-GCCGCCGATGTTTGGAAG 75883 || || ||||||| | || | ||| || | | ||| || | ||| Sbjct 8408 GCGCTACGAGCAGGAGGGCCGCGCGCGCCGCG--TGGTCAAGGCCCAGGAGCTGTGGTTC 8351 Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || || ||| | || |||| ||||| || || || || ||||| |||||||| || || Sbjct 8350 GCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGC 8291 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 ||| ||| ||||| || | | || || ||| || || || || |||||||| Sbjct 8290 AACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAG 8231 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTT 76063 | | ||||||| || ||| ||| || ||||| |||| || |||| || Sbjct 8230 GTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTG 8171 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 || |||| || || | | || || ||||| | | || || || || || Sbjct 8170 CCCAAGT---TC-ATCACCA-AC-GGCGAGTTTGACCACCAGAAGCTGCACGACGTCGTG 8117 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAG 76180 ||| | || ||||| || || ||| || || |||| || | || ||||| ||| Sbjct 8116 AAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGAG 8057 Query 76181 ACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 || || || || || ||||| ||||| || || || | || || || || || || Sbjct 8056 ---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCC 8000 Query 76241 GATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAA-TGC 76299 || || || || | ||| || | | || || || ||| ||| | || || Sbjct 7999 GACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGC 7940 Query 76300 TCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGC 76359 | ||||| || ||||| || |||| |||||| || || | || | | Sbjct 7939 GC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGT 7881 Query 76360 CCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA 76419 | | || |||| |||| | ||||| || ||||||||| | || ||| ||| || Sbjct 7880 CGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGA 7821 Query 76420 TATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| | | | | || | ||||||| ||| | |||| Sbjct 7820 CCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGC 7761 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || | ||||| || ||| || | |||| || ||||| || ||||| ||| | || Sbjct 7760 CCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCA 7701 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 ||| |||| || || || |||||||| || ||||| || ||||||||| | | | Sbjct 7700 GATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCAT 7641 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 |||||| || || || | | |||||| ||||||| | || ||| || || || Sbjct 7640 CCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCCAGCAGCGCGG 7581 Query 76660 TCTCTGGT---CCAAGGATATGAAGGATCTCATGGTG-AAAGCGGGTGGTTCCATTCAAA 76715 ||||||| || | | ||| | ||| | | | | ||| | | || || Sbjct 7580 CCTCTGGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTC----CAGC 7525 Query 76716 ATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGA 76775 ||| || ||||| || || |||||||| || ||| || |||||||| || | Sbjct 7524 GCATCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGC 7465 Query 76776 TGAAAGATGTCATTGACATGGCCGCAGATCG-TGGTCGCTTCATTGATCAAAGTCAAAGT 76834 | | |||| ||||||||||| ||||| | | | || ||| || || || || Sbjct 7464 AGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGC-CTACATCGACCAGAGCCAGTCG 7406 Query 76835 ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCG 76894 | || | | ||||| || || | |||||||| | || ||||| | ||||| Sbjct 7405 CTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACGCC 7346 Query 76895 TGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 ||| |||| ||||| ||||| |||||||| || || Sbjct 7345 TGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCG 7308 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 9182 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 9125 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 9124 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 9065 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 9064 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGA 9005 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 9004 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 8945 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 8944 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 8885 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 8884 CGGCCGGCGGCATCGG 8869 >seq203116 Length=2194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 695 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 636 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 635 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 576 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 575 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 516 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 515 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 457 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 456 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 400 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 399 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 340 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 339 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 282 >seq202680 Length=3004 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 2328 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 2269 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 2268 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 2209 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 2208 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 2149 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 2148 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 2090 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 2089 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 2033 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 2032 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1973 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1972 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1915 >seq202679 Length=2935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 2259 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 2200 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 2199 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 2140 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 2139 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 2080 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 2079 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 2021 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 2020 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 1964 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 1963 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1904 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1903 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1846 >seq198733 Length=2163 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 1469 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 1528 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 1529 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 1588 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 1589 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 1648 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 1649 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 1707 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 1708 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 1764 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 1765 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1824 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1825 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594898183494560