Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq199423 105 2e-17 >seq199423 Length=5623 Score = 105 bits (116), Expect = 2e-17 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 3210 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 3151 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 | ||| || || | | | ||| |||| ||||| ||||||| ||| || | | Sbjct 3150 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCACGCGACTCCGGACCAAAG 3091 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| ||| |||||| ||||| || | || ||| | | ||||| ||||| || Sbjct 3090 TCGTCCTTCACAAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGCCC 3031 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCT 302857 || ||||||||||| |||| ||| | | || |||||| || || ||| | | |||| Sbjct 3030 TCGACGTTCTGCTGACCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCCT 2973 Query 302858 TGGAGCCAGCATTTACCAT 302876 |||| || ||| | ||||| Sbjct 2972 TGGACCCGGCAATCACCAT 2954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467590899988169