Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq203874 82.4 7e-11 seq191119 82.4 7e-11 seq189946 82.4 7e-11 seq179504 82.4 7e-11 >seq203874 Length=1337 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 306 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 365 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 366 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 423 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 424 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 483 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 484 ACGGCGCGGCC 494 >seq191119 Length=1049 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 702 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 761 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 762 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 819 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 820 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 879 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 880 ACGGCGCGGCC 890 >seq189946 Length=1293 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 946 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 1005 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 1006 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 1063 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 1064 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 1123 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 1124 ACGGCGCGGCC 1134 >seq179504 Length=801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 454 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 513 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 514 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 571 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 572 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 631 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 632 ACGGCGCGGCC 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474707868298760