Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq176826 96.9 3e-15 seq197745 91.5 1e-13 seq204705 89.7 4e-13 seq193485 87.8 1e-12 seq183577 84.2 2e-11 seq215899 82.4 6e-11 >seq176826 Length=2423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 199 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 140 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| ||||| || ||| | ||| ||||| Sbjct 139 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGATAAGGAGGGCATCCCCCCTGATCA 80 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||||||||| ||||| ||||||| || |||| |||||||| Sbjct 79 GCAGCGCCTCATCTTTGCGGGTAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAA 20 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 19 CATCCAGAAGGAGTCGAC 2 >seq197745 Length=2070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGGCG 107616 ||| || || ||||| || | || ||||| ||||||||| |||| ||| ||| | | Sbjct 2070 GCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCG-G 2012 Query 107617 ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGC 107676 | || ||| | || || || ||||| || || |||||| | ||| |||||||| Sbjct 2011 ACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAGC 1952 Query 107677 AGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACA 107736 || | || || | || || || ||||| ||||||| | || |||| |||||||||| Sbjct 1951 AGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAACA 1892 Query 107737 TTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | || |||||||| || | ||| | ||| Sbjct 1891 TCCAGAAGGAGTCGACTCTCCACCTCGTG 1863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| || || || |||| ||| | || Sbjct 1844 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCCAGC 1785 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 1784 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1725 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| ||||||||| Sbjct 1724 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 1665 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 1664 ATCCAGAAGGAGTCGAC 1648 >seq204705 Length=1723 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 1316 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGTCGAGC 1375 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | ||||| || ||||| || || || ||| | ||| || ||| Sbjct 1376 GACACGATCGAGAACGTAAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1435 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 1436 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 1495 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 1496 ATCCAGAAGGAGTCCACGCTCCAC 1519 >seq193485 Length=2074 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 || ||||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 1241 TACAATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTC 1300 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 ||| || ||| | || || ||||||||| || || || ||| | ||| || Sbjct 1301 GTCCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGA 1360 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | || || | || || || ||||| ||||||| || | || ||||| Sbjct 1361 TCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTA 1420 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| || Sbjct 1421 CAACATCCAGAAGGAGTCCAC 1441 >seq183577 Length=864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| || || ||| |||| ||| | || Sbjct 285 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCAGC 226 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || || | ||| |||||| Sbjct 225 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 166 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 165 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 106 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| ||| | ||| Sbjct 105 ATCCAAAAGGAGTCCACGCTCCAC 82 >seq215899 Length=7104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| |||| ||| | Sbjct 1649 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCGTC 1590 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | ||| ||||| Sbjct 1589 CGACACAATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1530 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 1529 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACTACAA 1470 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 1469 CATCCAGAAGGAGTCCACGCTCCAC 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397787200336393