Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq219401 93.3 3e-14 seq183577 89.7 4e-13 >seq219401 Length=2348 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 || ||| || || | || || || || || || || ||||| || || || | ||||| Sbjct 813 CAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCG 872 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 | || ||||| || || ||||| | || | | |||||||| || ||||||||||| Sbjct 873 ACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTC 932 Query 29688 TTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || | ||||| ||||| | || | ||||| || || || || || || Sbjct 933 CTTGTCCTGAATCTTTTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCCACCTCGAGGGT 992 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || | ||| || || || |||||||| Sbjct 993 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || |||||||| || || || ||||| || || || | ||| || || ||||| || Sbjct 559 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 618 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||| || || ||||||||||| ||||| || | || Sbjct 619 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTC 678 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||||| | || | ||||| || || || || || || || || ||||| || Sbjct 679 TGCTTGACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTC 738 Query 29764 AAGGTTTTAACAAATATCTGC 29784 | ||| || || || |||||| Sbjct 739 AGGGTCTTGACGAAGATCTGC 759 >seq183577 Length=864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || |||||||| || ||||| ||||| || || || Sbjct 59 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCC 118 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || ||||| || | || | | |||||||| || ||| Sbjct 119 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 178 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || | || | || || || || Sbjct 179 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACC 238 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || | ||| || || || |||||||| Sbjct 239 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384166908388317