Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq217546 125 7e-24 seq197745 98.7 9e-16 seq193485 89.7 5e-13 seq176826 89.7 5e-13 seq215899 86.0 6e-12 seq186964 86.0 6e-12 seq219401 84.2 2e-11 seq202717 84.2 2e-11 seq183577 84.2 2e-11 seq59547 82.4 7e-11 >seq217546 Length=10770 Score = 125 bits (138), Expect = 7e-24 Identities = 324/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTC 147518 |||| || ||||| ||||| |||||| ||| |||| || || ||||||| |||| || Sbjct 8175 GCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACG-TGTACTGGACGACCTC 8233 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||||||||| | | ||| || | | ||||| ||| || | ||||| Sbjct 8234 CGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCA 8293 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AA 147635 ||||| ||| | |||||||| || ||||||||||| |||| || | ||| || Sbjct 8294 GGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAA 8353 Query 147636 CCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || ||| ||||| || ||| ||| || | ||||||||| | ||||| |||| Sbjct 8354 CCA---CAGCTCCTGGGCCTTGACCACGCGGC-GCGCGCGGCCCTCCTGCTCGTAGCGCT 8409 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 ||||| | ||| ||||| | ||| | | ||| |||||||| || | || | Sbjct 8410 CGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGC 8469 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | |||||||| | || ||| | ||||| ||| ||||| || || | ||||| Sbjct 8470 AAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 8529 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAA 147874 | |||| | |||||||| || | ||||| ||| ||| |||| | | Sbjct 8530 GGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGA 8589 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | | | | ||||||| ||||||||||| || | ||||| ||| | ||||| || |||| Sbjct 8590 GGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCT 8649 Query 147935 TTCCGCC 147941 | || || Sbjct 8650 TACCACC 8656 >seq197745 Length=2070 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 1651 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCG 1710 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || |||| Sbjct 1711 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 1770 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| | | ||| || |||| || | ||| || || ||||| || || Sbjct 1771 TTCTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTG 1830 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1831 ACAAAGATCTGCAT 1844 >seq193485 Length=2074 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || || |||||||| || |||| Sbjct 1438 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 1379 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || || || ||| ||||| |||| Sbjct 1378 AAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACG 1319 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || || || || || || Sbjct 1318 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 1259 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1258 ACGAAGATTTGCAT 1245 >seq176826 Length=2423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| ||||| | | Sbjct 5 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACCCGCA 64 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| || || ||||| || ||||| || || || |||| Sbjct 65 AAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGGATCTTCTGCTTCACG 124 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || || || || || || Sbjct 125 TTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTC 184 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 185 ACGAAGATCTGCAT 198 >seq215899 Length=7104 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || || | Sbjct 1227 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCG 1286 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || || || || || || || || || |||| Sbjct 1287 AAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 1346 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| || | ||| ||||| || || || || Sbjct 1347 TTCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTC 1406 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 1407 ACGAAGATCTGCATG 1421 >seq186964 Length=541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | || || || |||||||| || |||| Sbjct 215 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 274 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| |||||||| || || || || || |||| Sbjct 275 AAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACG 334 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | ||| || || || || || || Sbjct 335 TTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTG 394 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 395 ACGAAGATCTGCATG 409 >seq219401 Length=2348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| ||||| | Sbjct 112 GACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCCGCG 171 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || || || || || || || || || |||| Sbjct 172 AAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 231 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | ||| ||||| || || || || Sbjct 232 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTCTTC 291 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 292 ACGAAGATCTGCAT 305 >seq202717 Length=961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| ||||| | Sbjct 780 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACCCGCG 721 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || || || || || || || || |||| Sbjct 720 AAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 661 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || |||||||| || || Sbjct 660 TTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 601 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 600 ACGAAGATCTGCAT 587 >seq183577 Length=864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| || ||| || || |||||||| || |||| Sbjct 92 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 151 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| || || || || || || || || || || |||| Sbjct 152 AAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 211 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 212 TTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTC 271 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 272 ACGAAGATCTGCAT 285 >seq59547 Length=127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 51793 TGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATT 51852 ||||| |||||||||||| ||||||| | |||||||||| || |||||||||| | Sbjct 92 TGCCGAAGGGGTTGAAGTGGCCGCCCGCACTCACGCAGCCGTTGGTGTTGTCGCCGAACT 33 Query 51853 CGTGCACGTGGAATCCGTGCAGGCC 51877 |||| |||||||| ||||| |||| Sbjct 32 CGTGGACGTGGAAGCCGTGGGGGCC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475275872443320