Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq193485 96.9 3e-15 seq197745 87.8 2e-12 >seq193485 Length=2074 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || | ||||| |||| ||||| | | Sbjct 1245 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 1304 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 1305 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 1364 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || |||||| || ||||| || | | | | || ||| ||||| Sbjct 1365 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 1424 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || || |||||| |||| Sbjct 1425 ATCCAGAAGGAGTCCACCCTTCA 1447 >seq197745 Length=2070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | ||||| || ||||||| |||| ||||| ||| | Sbjct 1844 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCCAGC 1785 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || || || || || || || ||||| || || || || ||| Sbjct 1784 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1725 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || |||||| || ||||| || | | | | | ||| ||||| Sbjct 1724 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 1665 Query 25355 ATTCAAAAAGAATCCACC 25372 || || || || || ||| Sbjct 1664 ATCCAGAAGGAGTCGACC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443847373455840