Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq203116 129 2e-24 seq202680 129 2e-24 seq202679 129 2e-24 seq198733 129 2e-24 seq217546 93.3 1e-13 >seq203116 Length=2194 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 905 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 846 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 845 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 789 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 788 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 730 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 729 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 670 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 669 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 611 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 610 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 552 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 551 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 492 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 491 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 443 >seq202680 Length=3004 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 2538 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 2479 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 2478 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 2422 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 2421 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 2363 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 2362 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 2303 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 2302 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 2244 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 2243 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 2185 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 2184 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 2125 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 2124 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 2076 >seq202679 Length=2935 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 2469 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 2410 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 2409 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 2353 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 2352 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 2294 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 2293 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 2234 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 2233 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 2175 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 2174 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 2116 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 2115 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 2056 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 2055 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 2007 >seq198733 Length=2163 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 1259 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 1318 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 1319 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 1375 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 1376 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 1434 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 1435 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 1494 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 1495 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 1553 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 1554 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 1612 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 1613 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 1672 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 1673 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1721 >seq217546 Length=10770 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 7357 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 7298 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 7297 GCCGCCAACGCGATCCAGTTCACCGT 7272 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 7758 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 7699 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 7698 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 7639 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 7638 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 7607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1583774687653965