Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq217546 129 7e-25 >seq217546 Length=10770 Score = 129 bits (142), Expect = 7e-25 Identities = 690/1090 (63%), Gaps = 22/1090 (2%) Strand=Plus/Plus Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686 |||||||| || || || ||| || | ||||||| |||||| | | || || Sbjct 7572 GACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCG 7631 Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746 || |||||| | | | ||||||||| || ||||| || |||||||| || || || Sbjct 7632 CCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTG 7691 Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806 |||| ||| || | ||| ||||| || ||||| || |||| | || ||| || ||| Sbjct 7692 CCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGA 7751 Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCT 110866 || | || |||| | ||| ||||||| | || | | | | Sbjct 7752 CCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCACCTGTCCGACGGCACGACG 7811 Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 |||| | ||| ||| ||| || | ||||||||| || ||||| |||| | ||| Sbjct 7812 CCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAG 7871 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTT 110983 | || | | | | || | || | ||| | |||||| |||| || ||||| Sbjct 7872 GTGCCCTCGACCTGCGCGAGCTC---GTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTC 7928 Query 110984 TCAAAGATACGAGCA-TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA 111042 || ||||| | || || | ||| ||| || || || | | || ||| | Sbjct 7929 TCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGAT 7987 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || || || || || || || || || || | || || || ||||| ||||| || || Sbjct 7988 CATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGA 8047 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || ||| ||||| || | || |||| || || ||| || || || Sbjct 8048 GTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 8104 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||| || | ||| || || || || || | | ||||| || || | | || Sbjct 8105 GGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTGGTCAAACTCGCC-GT-TGGTGAT- 8161 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || |||| || || |||| || |||| ||||| || ||| ||| || || Sbjct 8162 GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGT 8218 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | | || || || | ||| || || || || || | | || ||||| Sbjct 8219 GTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTT 8278 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| |||||| || |||||||| |||||||||||||| || ||||| |||| || Sbjct 8279 GGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGA 8338 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 111459 | ||| || || ||| | || ||| || | | | || || |||||| Sbjct 8339 CTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTG 8398 Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||| ||| | || ||||||| ||| || |||| | || || || || Sbjct 8399 CTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGC 8458 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || || || ||||| | || || ||| || ||||||||||| ||||| Sbjct 8459 CTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTC 8518 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 |||||||||||| | |||||||| | || ||| || | || ||||| Sbjct 8519 GGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CT 8577 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || Sbjct 8578 TCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAG 8637 Query 111699 ATCCCTTTCG 111708 ||||| || Sbjct 8638 CACCCTTGCG 8647 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 8869 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 8928 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 8929 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 8988 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 8989 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 9048 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 9049 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 9108 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 112133 | ||| || || | || |||| |||| || |||||| ||| ||| |||| Sbjct 9109 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 9166 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| |||||||| Sbjct 9167 TCTTGAAGCCAAAGTA 9182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626272434895200