Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq209232 105 2e-17 seq204705 102 2e-16 seq187864 102 2e-16 seq215899 98.7 3e-15 seq183577 93.3 1e-13 seq219401 89.7 2e-12 seq201113 87.8 5e-12 seq189393 87.8 5e-12 seq176826 84.2 7e-11 >seq209232 Length=3227 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || ||||||||||| || || || || || || | Sbjct 865 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 924 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || ||||| ||||| || Sbjct 925 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 984 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || |||| ||||||| || || Sbjct 985 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCAGATGACTCGACC 1044 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| ||||| || || || || || ||||||||| Sbjct 1045 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 1092 >seq204705 Length=1723 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 1546 CATACCACCACGGAGGCGGAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 1487 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 1486 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 1427 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || ||||| || || |||| || | || Sbjct 1426 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTTACGTTCTCGATCGTGTCGCTCGACTC 1367 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 1366 AACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1316 >seq187864 Length=484 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 172 CATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 231 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 232 AGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 291 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || || || || || |||| || || || Sbjct 292 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTC 351 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| ||||| || || || || || |||||||| Sbjct 352 GACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 402 >seq215899 Length=7104 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || || | | || || || || Sbjct 981 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCC 1040 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||| ||||||||||| || || || || || ||| Sbjct 1041 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 1100 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || || ||| || || || || | ||| Sbjct 1101 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTC 1160 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 1161 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1192 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 1418 CATGCCGCCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 1477 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 1478 GGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 1537 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || | || || | || Sbjct 1538 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATTGTGTCGGACGACTC 1597 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || |||| ||||| ||||| || || || || || ||||||||| Sbjct 1598 GACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 1649 >seq183577 Length=864 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| ||||| || || || || | | || || || || Sbjct 74 AGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 133 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||||||||| ||||| || || || ||| Sbjct 134 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || || | ||| | ||| || || || || || | || Sbjct 194 TGGATCTTCTGCTTCACGTTCTCGATGGTATC-GCTGGACTCGACCTCGAGGGTGATAGT 252 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 253 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 >seq219401 Length=2348 Score = 89.7 bits (98), Expect = 2e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 531 CATACCACCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 590 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||| || || Sbjct 591 GGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 650 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || | || || || Sbjct 651 AGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCCGAGCTCTC 710 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || |||| ||||| ||||| || || || || || |||||| Sbjct 711 GACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGC 759 >seq201113 Length=6087 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 3721 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 3780 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 3781 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 3811 >seq189393 Length=4042 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 3927 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 3986 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 3987 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 4017 >seq176826 Length=2423 Score = 84.2 bits (92), Expect = 7e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 140540 AGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCC 140599 ||| ||||| || || || || || || | | || || || || || || || || || Sbjct 1 AGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACC 60 Query 140600 AGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTT 140659 |||||||| || || ||||||||||| || || || || |||||||| || || || Sbjct 61 CGCAAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGGATCTTCTGCTT 120 Query 140660 TACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTG 140718 || || || || | || | ||| || || || || || | ||||| ||||| || | Sbjct 121 CACGTTCTCGATGGTGTC-GCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 179 Query 140719 TTTTTACAAAAATCTGCATT 140738 | || || || ||||||||| Sbjct 180 TCTTCACGAAGATCTGCATT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510902960127011