Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq220101 87.8 2e-12 seq194914 87.8 2e-12 >seq220101 Length=2090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 168 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 109 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 108 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 49 Query 104267 CCT 104269 || Sbjct 48 GCT 46 >seq194914 Length=947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 526 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 467 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 466 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 407 Query 104267 CCT 104269 || Sbjct 406 GCT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656893602149120