Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq217729 82.4 6e-11 seq196592 82.4 6e-11 seq183814 82.4 6e-11 seq183813 82.4 6e-11 >seq217729 Length=2057 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 1882 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 1824 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1823 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1766 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 1765 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1734 >seq196592 Length=1073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 898 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 840 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 839 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 782 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 781 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 750 >seq183814 Length=1086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 233 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 175 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 174 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 117 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 116 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 85 >seq183813 Length=1164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405200494196604