Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq217729 82.4 6e-11 seq196592 82.4 6e-11 seq183814 82.4 6e-11 seq183813 82.4 6e-11 >seq217729 Length=2057 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 1882 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 1824 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1823 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1766 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 1765 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1734 >seq196592 Length=1073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 898 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 840 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 839 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 782 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 781 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 750 >seq183814 Length=1086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 233 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 175 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 174 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 117 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 116 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 85 >seq183813 Length=1164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368497828382447