Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq203116 104 3e-17 seq202680 104 3e-17 seq202679 104 3e-17 seq198733 104 3e-17 >seq203116 Length=2194 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 935 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 936 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 995 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 996 CTTGTACATCTCCCAGAT 1013 >seq202680 Length=3004 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 2090 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2149 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 2150 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2208 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 2209 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2268 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 2269 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2328 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 2329 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2388 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 2389 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2448 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 2449 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2508 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 2509 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 2568 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 2569 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 2628 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 2629 CTTGTACATCTCCCAGAT 2646 >seq202679 Length=2935 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 2021 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2080 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 2081 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2139 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 2140 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2199 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 2200 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2259 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 2260 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2319 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 2320 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2379 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 2380 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2439 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 2440 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 2499 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 2500 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 2559 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 2560 CTTGTACATCTCCCAGAT 2577 >seq198733 Length=2163 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 1707 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1648 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 1647 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1589 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 1588 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1529 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 1528 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1469 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 1468 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 1409 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 1408 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1349 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 1348 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1289 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 1288 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 1229 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 1228 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 1169 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 1168 CTTGTACATCTCCCAGAT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692722537739680