Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq206045 89.7 2e-13 seq206044 89.7 2e-13 seq203559 89.7 2e-13 seq197846 89.7 2e-13 >seq206045 Length=4802 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2564 GCCTCTACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 2623 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 2624 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 2683 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 2684 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 2742 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 2743 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 2802 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 2803 GTCCTCGTGATTCTCC 2818 >seq206044 Length=4801 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2563 GCCTCTACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 2622 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 2623 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 2682 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 2683 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 2741 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 2742 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 2801 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 2802 GTCCTCGTGATTCTCC 2817 >seq203559 Length=8824 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 7855 GCCTCTACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 7796 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 7795 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 7736 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 7735 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 7677 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 7676 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 7617 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 7616 GTCCTCGTGATTCTCC 7601 >seq197846 Length=8812 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 970 GCCTCTACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 1029 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 1030 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 1089 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 1090 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 1148 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 1149 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1208 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1209 GTCCTCGTGATTCTCC 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186791104967232