Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq207413 129 6e-25 seq203897 129 6e-25 seq203896 129 6e-25 seq199157 129 6e-25 >seq207413 Length=2163 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 454 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 513 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 514 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 573 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 574 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 633 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 634 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 690 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 691 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 750 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 751 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 810 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 811 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 870 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 871 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 928 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 929 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 988 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 989 CGGCCTTCTTGTACATCTCCCAGAT 1013 >seq203897 Length=2989 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 2072 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 2131 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 2132 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 2191 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 2192 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 2251 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 2252 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 2308 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 2309 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 2368 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 2369 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 2428 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 2429 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 2488 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 2489 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 2546 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 2547 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 2606 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 2607 CGGCCTTCTTGTACATCTCCCAGAT 2631 >seq203896 Length=2920 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 2003 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 2062 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 2063 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 2122 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 2123 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 2182 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 2183 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 2239 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 2240 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 2299 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 2300 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 2359 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 2360 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 2419 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 2420 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 2477 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 2478 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 2537 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 2538 CGGCCTTCTTGTACATCTCCCAGAT 2562 >seq199157 Length=2194 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 1741 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 1682 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 1681 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 1622 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 1621 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 1562 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 1561 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCG 1505 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 1504 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 1445 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 1444 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 1385 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 1384 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 1325 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 1324 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 1267 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 1266 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 1207 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 1206 CGGCCTTCTTGTACATCTCCCAGAT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516093354107760