Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq196771 156 5e-33 >seq196771 Length=22834 Score = 156 bits (172), Expect = 5e-33 Identities = 194/263 (74%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 |||| |||||| ||||||| ||||| || |||| | |||||||||||| || | |||| Sbjct 20228 TCCAGGTGGTTCAGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCG 20169 Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| | ||||| | ||| | |||||||| | ||| ||| |||||||| ||| Sbjct 20168 TATCCCGTCACATGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGGC 20109 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG-GAGAGCTCCCCGCCCGC 145868 |||||||| |||||| ||||||||||||| ||||| ||| || ||| ||| || Sbjct 20108 ACCCCCAGGAACATGTCGGCCGAGCGCTGGTAAAGCTG-CAGCGACAGCCGGCCGTCCTG 20050 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 ||| | ||| ||||| ||||||||||||||||||||| | || || | || Sbjct 20049 CACCCGCACCTGCCACAGCGTATGGCAGGGCGGCAGGGCCATGCGGTCCACCTCTCCGGG 19990 Query 145929 GTTCCAGGCGGTGAGGACGAGCC 145951 ||||||||| | || || |||| Sbjct 19989 GTTCCAGGCCGAGACGATCAGCC 19967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588421029747280