Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq224298 87.8 2e-12 seq183361 87.8 2e-12 seq179713 87.8 2e-12 seq178618 87.8 2e-12 >seq224298 Length=3023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 2708 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 2649 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 2648 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 2591 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 2590 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 2531 Query 151191 C 151191 | Sbjct 2530 C 2530 >seq183361 Length=1018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 681 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 740 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 741 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 798 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 799 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 858 Query 151191 C 151191 | Sbjct 859 C 859 >seq179713 Length=801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 464 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 523 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 524 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 581 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 582 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 641 Query 151191 C 151191 | Sbjct 642 C 642 >seq178618 Length=1047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 710 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 769 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 770 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 827 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 828 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 887 Query 151191 C 151191 | Sbjct 888 C 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607088500959280