Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq197527 201 4e-47 seq198488 196 2e-45 seq183536 196 2e-45 seq178390 96.9 1e-15 >seq197527 Length=40067 Score = 201 bits (222), Expect = 4e-47 Identities = 219/290 (76%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 3734 GACTGGTGGACCGGTGAAGGTGTCACGGCAAAACGCATTGCTGGCGCTCTGCGCTCCATC 3793 ||| | ||||| || || || || || || || ||||| || | || ||||| || ||| Sbjct 26138 GACGGATGGACTGGCGACGGCGTGACAGCCAACCGCATCGCCGCGGCCCTGCGGTCGATC 26079 Query 3794 GGCAACGATGTCGATGTGACCGTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGC 3853 | ||| ||| | || || || |||||||||||||||||||| | ||||| ||| Sbjct 26078 ACCGCCGA---CGAGATCACGGTCGACCTCAACAGCCCCGGCGGCGACTTCTTCGAGGGC 26022 Query 3854 CTGGCCATTTACAACCTGCTGCGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGC 3913 |||| || |||||||||||||||||| || ||||||||||||| |||| |||| Sbjct 26021 GTGGCGATCTACAACCTGCTGCGCGAGGACCCACGCAAGGTCACGGTCCGCATCCTCGGG 25962 Query 3914 CTGGCTGCCTCTGCCGCCTCTTTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGC 3973 || || ||||| |||||||| | ||||||||||| || || || ||| |||||||| Sbjct 25961 CTTGCCGCCTCCGCCGCCTCGGTGATCGCCATGGCCGGCGACGAGGTCCAGATCGGCCGT 25902 Query 3974 GCCGCCTTCCTGATGATCCATAACGCCTGGCTGATCGCCATGGGTAATCG 4023 |||| ||||||||| |||| || |||||| || ||||||| || || || Sbjct 25901 GCCGGATTCCTGATGCTCCACAATGCCTGGGTGGTCGCCATCGGCAACCG 25852 >seq198488 Length=23545 Score = 196 bits (216), Expect = 2e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 3815 GTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTG 3874 ||||||||||||||||| ||||||||||| ||||| || || ||||| |||||| ||||| Sbjct 3726 GTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTG 3785 Query 3875 CGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCT 3934 |||| |||||||||| | ||||||||| |||| |||| || || ||||| |||||||| Sbjct 3786 CGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCG 3845 Query 3935 TTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCAT 3994 |||| ||||||||||| || ||| |||| |||||| | ||| ||||||||||| Sbjct 3846 GTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCTGATGATCCAC 3905 Query 3995 AACGCCTGGCTGATCGCCATGGGTAATCGGAATGATCT 4032 ||| ||||| | || ||| | ||| | || || || || Sbjct 3906 AACACCTGGGTCATGGCCGTCGGTGACCGCAACGACCT 3943 Score = 154 bits (170), Expect = 5e-33 Identities = 219/302 (73%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 11530 TTGCCAATGCGA-GCACGACCGAGTTTCAGAAGTATGCGGCTGGCGCAAAGCTGGTTGGC 11588 |||||||||| | || ||| || || |||||| || || ||| ||| ||| ||| Sbjct 9584 TTGCCAATGCCACGCCCGAA-GAATTCCAGAAGATGGCCTATGCCGCGGAGCAGGTGGGC 9642 Query 11589 ATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGGCGACTTC 11648 || ||| |||||| | | |||||| | ||||| || |||||| ||| ||||||||| Sbjct 9643 ATCTCGCAGGAGAAGTTCTCCGACATCCTGAAGGATGTGAACGACCGGGTGGGCGACTTC 9702 Query 11649 CTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAAAGTTGGC 11708 || |||||||| || || | || ||||||||| | | ||||| | || ||| Sbjct 9703 ATCGCCACCGGCGGCGGGCCGATGAAGGACTTCTTCGAGCGCATCGCGCCCCAGGTGGGC 9762 Query 11709 GTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCTTG--GCTTGTACGTCT 11766 || ||||| | |||||||| || || |||||| |||||| ||| |||| ||||| | Sbjct 9763 GTCACCGCGCAGCAGTTCCGCAAGCTCTCCGGCCCGCAGGCC-TTGCAGCTT-TACGTGT 9820 Query 11767 CGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGAGGCTATTG 11826 | ||||| ||||||||||| |||| |||| |||| | ||||||| | ||||| || | Sbjct 9821 CCAGCCTCGAAAAGGCCAACGTCAACCAGCAGGACTTCACCTTCTTCATGGAGGCGATGG 9880 Query 11827 CG 11828 || Sbjct 9881 CG 9882 >seq183536 Length=15448 Score = 196 bits (216), Expect = 2e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 3815 GTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTG 3874 ||||||||||||||||| ||||||||||| ||||| || || ||||| |||||| ||||| Sbjct 11723 GTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTG 11664 Query 3875 CGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCT 3934 |||| |||||||||| | ||||||||| |||| |||| || || ||||| |||||||| Sbjct 11663 CGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCG 11604 Query 3935 TTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCAT 3994 |||| ||||||||||| || ||| |||| |||||| | ||| ||||||||||| Sbjct 11603 GTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCTGATGATCCAC 11544 Query 3995 AACGCCTGGCTGATCGCCATGGGTAATCGGAATGATCT 4032 ||| ||||| | || ||| | ||| | || || || || Sbjct 11543 AACACCTGGGTCATGGCCGTCGGTGACCGCAACGACCT 11506 >seq178390 Length=32315 Score = 96.9 bits (106), Expect = 1e-15 Identities = 129/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 3822 TCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTG-CGCGAG 3880 |||||||||||||||| || ||||| | |||| || ||||| |||| ||| Sbjct 4680 TCAACAGCCCCGGCGGATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGAAGCG-C 4738 Query 3881 CACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATC 3940 ||| |||||| |||||| || ||| |||| | || ||||| ||||| || | | || Sbjct 4739 CACGAGGGCACGGTCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCATCCTACGTC 4798 Query 3941 GCCATGGCGGGGGATGAAATCCGCATCGGCCGCG-CCGCCTTCCTGATGATCCA 3993 ||||||||||| || || ||| ||| | ||| | |||||||||||||||||| Sbjct 4799 GCCATGGCGGGCGACGAGATCGTCAT-GCCCGAGAACGCCTTCCTGATGATCCA 4851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179960592541392