Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq28231 291 3e-74 seq188121 214 6e-51 seq185657 109 2e-19 >seq28231 Length=855 Score = 291 bits (322), Expect = 3e-74 Identities = 415/576 (72%), Gaps = 26/576 (5%) Strand=Plus/Minus Query 33313 GACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACG---T 33369 ||||||||||| ||||| | |||||||| || || ||||| |||| || | Sbjct 580 GACTGAACCGCGCCGGGTTTGCCGGAGGCTGCTTTCGTTTAGTTAC-GCGGCCATTGGTT 522 Query 33370 CAGCGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGC 33429 ||| || | ||| || | || ||||||| || ||||| || |||||||| | | Sbjct 521 CAGT----TTCCAGAGCTGCAT--AGAAGTTTGCTTCGGCTTCGGCAGGCGGGATGTTCC 468 Query 33430 CGAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTT 33489 ||| |||||| | || || | | |||| ||||| | |||||||| || ||||| || Sbjct 467 CGATCGGTTCGAGTAGGCGGCGGTTGTTGAACCAGTCCACCCATTCGAGGGTTGCGTATT 408 Query 33490 CGACGGATTCCCTCG----TTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTAC 33545 | |||| ||| | | ||| || |||| || || || | || | |||| || Sbjct 407 CCACGG----CCTGGAAGCTGCGCCATGGTCCGCGGCGGTGGATGACCTCGGCCTTGAAC 352 Query 33546 AGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAG 33605 || ||||||||||| ||||||||||||||||||||||||||||| |||||| || ||| Sbjct 351 AGCCCGTTGATCGTCTCGGCCAGCGCATTGTCGTAGCTGTCGCCGACGCTGCCCACCGAG 292 Query 33606 GGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCC 33665 || |||||||||||||| |||||||||||||||||||||||| | |||||| ||||| Sbjct 291 GGTTCGATGCCGGCCTCGGCCAGCCGTTCGCTGTAGCGAATGGACAGGTATTGGGACCCG 232 Query 33666 CTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGT 33725 | |||| |||||||| ||| | | ||| ||| || |||| | | || ||| ||| Sbjct 231 CGGTCGCTATGATGAACCAACCCCATGCCCTTGCCGGGGCGGCGATCATGCACCGCCTGT 172 Query 33726 TCAAGTGCATCCAGAACAAAGTCCGTGGTCAT-CGACGA---GCTGACCCGCCAGCCAAC 33781 || || ||||| ||||| || || || ||| || || |||||| ||||||||||| Sbjct 171 TCCAGAGCATCGAGAACGAA--CCCTG--CATGCGCGGAGCTGCTGACGCGCCAGCCAAC 116 Query 33782 AATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGA 33841 || |||||| | | ||||| ||||| || || || | | |||| ||| || | Sbjct 115 GATCTTGCGGGCATAGGCATCGATGACGAAGGCGACATAGACGAAACCTTTCCAGGTTGC 56 Query 33842 GACATACGTAAAATCCGACACCCAGAGCTGATTCGG 33877 |||||| || |||||||| ||||| ||| ||||| Sbjct 55 GACATATGTGAAATCCGAGACCCACAGCATGTTCGG 20 >seq188121 Length=1995 Score = 214 bits (236), Expect = 6e-51 Identities = 397/573 (69%), Gaps = 26/573 (5%) Strand=Plus/Minus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTT--GGTTTAAGTTAATGCGGACACG---TC 33370 |||||||| ||||| | |||||||| || |||| ||||| |||| || | || Sbjct 586 TGAACCGCGCCGGGTTTGCCGGAGGCTGATTTTGGTT--AGTTAC-GCGGCCATGGGTTC 530 Query 33371 AGCGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCC 33430 || || | ||| || |||| |||| ||||| ||||| || |||||||| | || Sbjct 529 AGT----TTCCAGAGCTGC--GTAGAAGTTGGCCTCGGCTTCTGCTGGCGGGATGTTCCC 476 Query 33431 GAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTC 33490 || || || | || ||| | | |||| ||||| | |||||||| ||||| || ||| Sbjct 475 GATGGGCTCGAGAAGACGACGGTTGTTGAACCAGTCCACCCATTCGAGCGTCGCGTATTC 416 Query 33491 GACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCC 33550 |||| || | || ||| ||| | || || || || | || | |||| ||||||| Sbjct 415 AACGGCTTACAAGCTTCGCCATGGGCCACGGCGGTGGATGACCTCAGCCTTGAACAGGCC 356 Query 33551 GTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTC 33610 |||||||| ||||||| || |||||||| |||||||| |||||| || ||||| || Sbjct 355 ATTGATCGTCTCGGCCAAGGCGTTGTCGTAACTGTCGCCGACGCTGCCCACCGAGGGTTC 296 Query 33611 GATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTC 33670 ||| ||||| || |||| || || |||||||||| | |||||| || |||||| | Sbjct 295 GATACCGGCTTCCGCCAAGCGCTCAGTGTAGCGAATAGACAGGTATTGCGAGCCCCTGAC 236 Query 33671 GGAATGATGAATCAAAGTCCCGT--CCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCA 33728 | || |||| || | ||| | ||| || || |||| | | || ||| ||||| Sbjct 235 GCTGTGGTGAACCA--GCCCCATGCCCTTTCCGGGGCGGCGATCATGCACCGCCTGTTCC 178 Query 33729 AGTGCATCCAGAACAAAGTCCGTGGTCAT-CGACGA---GCTGACCCGCCAGCCAACAAT 33784 | ||||| ||||| || ||| ||| || ||| |||||| ||||||||||| || Sbjct 177 AAGGCATCGAGAACGAACCCCG----CATGCGCCGAACTGCTGACGCGCCAGCCAACGAT 122 Query 33785 ACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGAC 33844 ||| || | | ||||| || || || || || | | || | ||| || | || Sbjct 121 CTTGCGAGCATAGGCATCGATGACAAAGGCGACATAGACGAACCCCTTCCAGGTGGCCAC 62 Query 33845 ATACGTAAAATCCGACACCCAGAGCTGATTCGG 33877 ||| || |||||||| ||||| ||| ||||| Sbjct 61 ATAGGTGAAATCCGATACCCAAAGCATGTTCGG 29 >seq185657 Length=1757 Score = 109 bits (120), Expect = 2e-19 Identities = 157/213 (74%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 34429 CTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGAC 34488 ||| ||||| || ||||||||||||||||||||||||| | | || ||||| ||| Sbjct 1338 CTTGACCCAGTCGTTCAGCGTCTGCGGCGTGCAGCCGATCTTTGCCGAGATCGACATGAC 1397 Query 34489 GGCCGCCCACATCGACGGGTGCTCG-CTACGCTGCTCGCGTACCAGGCGCACTGCGCGCT 34547 || ||| || | ||||| | | || || ||| ||||| ||||| || |||| Sbjct 1398 CGCTTGCCAGCGGGAGGCGTGCTGGCCCTCGTTG-TCGAAAACCAGCCGCACGGCCCGCT 1456 Query 34548 CTCGGACTTCCGGGGAAAACTGCTT--GGCTTCTGTTCATG--GCTCCATTCT-CTC-AG 34601 | || |||| ||||||||||| || | | || ||||| ||||||| || ||| || Sbjct 1457 CGCGCACTTTCGGGGAAAACTTGTTCGTGGTCTTGCTCATGATGCTCCATCCTACTCAAG 1516 Query 34602 AGTTGGAGCCTCC-ACAAACTCGGGGCGGTTCA 34633 ||||||||||||| ||||| ||| |||||||| Sbjct 1517 AGTTGGAGCCTCCGGCAAACCCGGCGCGGTTCA 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170217035596140