Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq207413 147 3e-30 seq203897 147 3e-30 seq203896 147 3e-30 seq199157 147 3e-30 >seq207413 Length=2163 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 576 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 577 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 636 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 637 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 696 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 697 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 756 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 757 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 816 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 817 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 876 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 877 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 935 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 936 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 994 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 995 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1045 >seq203897 Length=2989 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 2075 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2134 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 2135 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2194 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2195 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2254 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2255 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2314 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 2315 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2374 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2375 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2434 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 2435 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2494 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2495 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2553 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2554 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2612 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 2613 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 2663 >seq203896 Length=2920 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 2006 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2065 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 2066 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 2125 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 2126 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 2185 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2186 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 2245 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 2246 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 2305 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2306 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2365 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 2366 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2425 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 2426 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 2484 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2485 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2543 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 2544 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 2594 >seq199157 Length=2194 Score = 147 bits (162), Expect = 3e-30 Identities = 392/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 1738 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1679 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 1678 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1619 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 1618 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1559 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 1558 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGCG 1499 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 1498 CGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTAC 1439 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1438 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 1379 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 1378 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 1319 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 1318 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1260 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 1259 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 1201 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 1200 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628050316068960