Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq207413 147 3e-30 seq203897 147 3e-30 seq203896 147 3e-30 seq199157 147 3e-30 >seq207413 Length=2163 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 934 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 935 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 994 TTCTTGTACATCTCCCAGAT 1013 >seq203897 Length=2989 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2075 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2134 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 2135 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2193 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 2194 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2253 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2254 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2313 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 2314 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2373 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2374 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2433 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 2434 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2493 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 2494 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 2552 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 2553 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2611 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 2612 TTCTTGTACATCTCCCAGAT 2631 >seq203896 Length=2920 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 2006 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2065 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 2066 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2124 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 2125 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2184 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 2185 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2244 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 2245 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2304 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 2305 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2364 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 2365 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2424 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 2425 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 2483 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 2484 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2542 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 2543 TTCTTGTACATCTCCCAGAT 2562 >seq199157 Length=2194 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1738 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1679 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 1678 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1620 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 1619 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1560 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || ||| | |||| || || ||||| Sbjct 1559 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1500 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 1499 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 1440 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1439 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1380 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 1379 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1320 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 1319 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 1261 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 1260 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 1202 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 1201 TTCTTGTACATCTCCCAGAT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669255966626320