Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq203637 96.9 4e-15 seq223622 95.1 1e-14 seq223142 95.1 1e-14 seq177117 87.8 2e-12 >seq203637 Length=1734 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 1545 GCCGCCACGCAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1486 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| ||||| || |||||||| |||| || || ||||||||||| || Sbjct 1485 GAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGG 1426 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| ||||| || | | || | |||||||| | || || Sbjct 1425 AATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCCAC 1366 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 || | || | ||||||||||||| || || ||||| || ||||| || Sbjct 1365 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCGC 1315 >seq223622 Length=3914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||| ||||| || |||||||| |||| || || |||||||||||||| ||||| || || Sbjct 2216 GTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTT 2275 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||||| || | | || | ||||| ||| || || || | || | Sbjct 2276 GTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGAT 2335 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||||||||| || || ||||| || |||||| Sbjct 2336 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2372 >seq223142 Length=9055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 6130 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 6189 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| ||||| || ||||| ||| || || || Sbjct 6190 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 6249 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| ||| || || || | || | ||||||||||||| || Sbjct 6250 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 6309 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 6310 TTGACGAAGATCTGCAT 6326 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 6358 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 6417 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || ||||| || ||||| || || || || Sbjct 6418 GCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 6477 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | ||| || || | || | ||||||||||||| || Sbjct 6478 ACGTTCTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 6537 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 6538 TTGACGAAGATCTGCAT 6554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || || || || || |||||||| ||| | || |||| ||| ||||| || || | Sbjct 4889 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT--TCGACCGTCCTCGAGCTGCTTGC 4946 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || |||| || || ||||| |||||||| ||||| || ||||| ||| || || | Sbjct 4947 CGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCT 5006 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | |||||||| | || || || | || | |||||||||||| | | Sbjct 5007 TCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCG 5066 Query 143166 TTTTTACGAATATTTGCATA 143185 | || ||||| || |||||| Sbjct 5067 TCTTGACGAAGATCTGCATA 5086 >seq177117 Length=2010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||| | |||| ||| ||||| || Sbjct 1447 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 1388 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || |||| ||||| ||||||||||| || ||||| || ||||| ||| ||| Sbjct 1387 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1328 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | ||||| | | || || || | || | ||||||||||| Sbjct 1327 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1268 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || ||||| |||||||| Sbjct 1267 AGGGTCTTGACGAAGATTTGCAT 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505591704918240