Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq207413 196 7e-45 seq203897 196 7e-45 seq203896 196 7e-45 seq199157 196 7e-45 seq211828 179 5e-40 >seq207413 Length=2163 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1037 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 978 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 977 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 921 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 920 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 866 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 865 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 807 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 806 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 747 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 746 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 687 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 629 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 628 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 569 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 568 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 510 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 509 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 459 >seq203897 Length=2989 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 2655 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 2596 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 2595 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 2539 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 2538 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 2484 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 2483 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 2425 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 2424 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 2365 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 2364 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 2305 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 2304 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 2247 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 2246 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 2187 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 2186 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 2128 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 2127 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 2077 >seq203896 Length=2920 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 2586 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 2527 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 2526 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 2470 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 2469 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 2415 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 2414 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 2356 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 2355 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 2296 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 2295 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 2236 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 2235 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 2178 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 2177 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 2118 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 2117 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 2059 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 2058 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 2008 >seq199157 Length=2194 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1158 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 1217 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 1218 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 1274 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 1275 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 1329 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 1330 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 1388 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 1389 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 1448 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 1449 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 1508 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 1509 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 1566 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 1567 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 1626 Query 125464 CGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 1627 CCGGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 1685 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 1686 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 1736 >seq211828 Length=4713 Score = 179 bits (198), Expect = 5e-40 Identities = 332/483 (69%), Gaps = 8/483 (2%) Strand=Plus/Plus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 640 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 699 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 700 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 759 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGAC-GGTGGCTACTGGAGCCTAATGTGCCCCGA 97075 || || |||||||||||||||| | ||| || ||| ||||| || | |||||| | Sbjct 760 CCCGACCTGTTCATGAAGCGCGTGGA-GACGGGCGGCGACTGGTCGCTCTTTTGCCCCAA 818 Query 97076 CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTA 97135 | | | ||||| |||| ||| | |||||| | ||||| |||| |||||| | ||| Sbjct 819 CGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTA 878 Query 97136 CGAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| |||||||| || | | || ||| | || | || |||||| ||||| Sbjct 879 CGAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCGCCAT 935 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG 97252 | | | | ||| | ||||| || || || ||||| || |||||||| || || | Sbjct 936 CCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGG 995 Query 97253 CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 ||| |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 996 CAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGT 1055 Query 97313 AGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAA 97372 ||||| | || || |||||| ||| || ||| ||||| ||| || |||||||| Sbjct 1056 CCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAA 1115 Query 97373 GTT 97375 ||| Sbjct 1116 GTT 1118 Score = 89.7 bits (98), Expect = 8e-13 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| ||||| | Sbjct 1792 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCCGATCGCTC 1850 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---CAG 98155 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | || Sbjct 1851 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAA 1910 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 1911 GC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTA 1967 Query 98216 TCT 98218 || Sbjct 1968 CCT 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738979769358320