Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq179470 93.3 1e-14 >seq179470 Length=35510 Score = 93.3 bits (102), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 34067 TGGCTGCGTAACCTGATCGCCGGCGGTCATATCGCGCCAGGCGAAGTTGACGAAAGGAGT 34126 |||||||| |||| ||||||| ||| || | || | ||||| || |||||| | Sbjct 832 TGGCTGCGGGACCTCATCGCCGCCGGCCACCTTCCGGCTGGCGAGGTGGACGAACGATCC 773 Query 34127 ATTGAAGATGTCACACCTGACGACCTGCGAGGTTTTACGCAGTGCCACTTCTTCGCCGGA 34186 ||| || || || ||||||||| || || |||| || || ||||||||||| Sbjct 772 ATTCTCGACGTGGAGCCGTCCGACCTGCGCGGCTTCGCGCAATGTCATTTCTTCGCCGGG 713 Query 34187 ATTGGCGTCTGGTCTCATTCCCTGCGCCTCGCCGGA-TGGCCAGATGATAAAACAGTCTG 34245 || |||| ||| | | | ||||||||||| || ||||| || || | ||||| Sbjct 712 ATCGGCGGTTGGCCCTACGCACTGCGCCTCGCTGGCGTGGCC-GAGGACCGGCCGGTCTG 654 Query 34246 GACCGGCTC-CTGCCCGTGCCAGCCTTTCAGCGCGGCAGGCAAA 34288 |||||| || | |||| |||||||| |||||| ||| || ||| Sbjct 653 GACCGGATCGCCGCCC-TGCCAGCCCTTCAGCCAGGCCGGGAAA 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126487517985972