Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq222267 98.7 8e-16 >seq222267 Length=3969 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| | ||||| || | Sbjct 28 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCACCGTGCTTCTTAC- 86 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 87 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 146 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 147 GGACGTGGAAGCCGTG 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413438580899908