Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq212996 107 2e-18 >seq212996 Length=5711 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 99555 CGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGG 99614 || || |||||| ||||| |||||||| ||||||| | ||||||||||| | || Sbjct 4302 CGTGGCGTTGAGGAGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGG 4243 Query 99615 CCGCGGGGTC--CCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGC 99672 |||| | | ||||||| | | || | | |||||||| |||| |||| |||| Sbjct 4242 --GCGGCGCCAGCCGGGGATGCTGCGCTCGAGCTCGGCGTAGATCTTCTTGAGGGAGGGC 4185 Query 99673 GGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGG 99732 || | || ||||| ||| |||| ||||| |||||||||||||| | | || | Sbjct 4184 GGCACCGCCACGCCCCGGGTCACCGAGAAGGAGAGGCCGTGGGCCTGGTTCTCGTTGAAG 4125 Query 99733 TAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 || |||||||| |||||||| || ||||| || Sbjct 4124 TACGGGTCCTGCCCCAGGATCACCACCTTCAC 4093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439662025822320