Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq223142 102 2e-16 seq176952 100 7e-16 seq66624 100 7e-16 seq223622 98.7 2e-15 seq203637 96.9 8e-15 seq177117 91.5 3e-13 >seq223142 Length=9055 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 6130 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 6189 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 6190 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 6248 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 6249 CACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGT 6308 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 6309 CTTGACGAAGATCTGCAT 6326 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || |||| |||||| || || || || || Sbjct 4889 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGACCGTCCTCGAGCTGCTTGCCG 4948 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 4949 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 5007 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || || ||||| || || || | Sbjct 5008 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCG 5066 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 5067 TCTTGACGAAGATCTGCAT 5085 >seq176952 Length=5663 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 1114 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 1055 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 1054 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 996 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || ||||| || || || ||||| || || || || Sbjct 995 CACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 936 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 935 CTTCACGAAGATCTGCATT 917 >seq66624 Length=223 Score = 100 bits (110), Expect = 7e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || || || || || || || | ||| || || || || || || || Sbjct 207 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 148 Query 104462 TTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || ||||||||||| ||||| || || || | ||||||||| | || ||||| || || Sbjct 147 TTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGT 89 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||| || || || || || || |||||||| Sbjct 88 AATAGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 50 >seq223622 Length=3914 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| | || || | ||||| || || || || ||||| || || || | ||| Sbjct 2193 TTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGC 2252 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| ||||| || || || || |||||||||||| || || || || | ||| ||| Sbjct 2253 TGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCG 2312 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || || || ||||| || || || || || || || |||||||| Sbjct 2313 CTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2371 >seq203637 Length=1734 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | |||||| Sbjct 1530 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTC 1471 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| || || || || || || || Sbjct 1470 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTC 1411 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||| || || || || | || || | || | || ||||| || || || | Sbjct 1410 CTGAATCTTTTGCTTGACGTTCTCGATCGTGTC-CGAGCTCTCCACCTCGAGGGTGATGG 1352 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 |||| || || || || || || || |||||||| ||||| Sbjct 1351 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCGCGTGTA 1310 >seq177117 Length=2010 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 1441 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 1382 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || |||||||||||| || Sbjct 1381 GCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1322 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || || || ||||| || || || || Sbjct 1321 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1262 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 1261 TTGACGAAGATTTGCATT 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148086775987256