Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq219361 82.4 5e-11 seq184032 82.4 5e-11 seq184031 82.4 5e-11 >seq219361 Length=4201 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 819 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 877 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 878 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 935 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 936 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 967 >seq184032 Length=1086 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 233 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 175 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 174 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 117 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 116 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 85 >seq184031 Length=1083 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339207026256186