Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq219361 91.5 1e-13 seq184032 91.5 1e-13 seq184031 91.5 1e-13 >seq219361 Length=4201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 324 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 265 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 264 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 208 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 207 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 967 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 908 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 907 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 851 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 850 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 819 >seq184032 Length=1086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 85 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 144 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 145 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 201 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 202 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 233 >seq184031 Length=1083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 324 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 265 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 264 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 208 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 207 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337837982064528