Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq217108 132 8e-27 seq220441 105 1e-18 seq218726 105 1e-18 seq208670 102 1e-17 seq178725 96.9 5e-16 seq168900 80.6 4e-11 >seq217108 Length=7492 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 965 CTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 906 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 905 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 846 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 845 CTCGAGAACGTCATCCGCGACGCCGTAACCTACACCGAGCACGCCCGCAGGAAGACCGTC 786 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 785 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 745 >seq220441 Length=1167 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1025 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1084 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1085 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 1144 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 1145 CTCGAGAACGTCATCC 1160 >seq218726 Length=6965 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3910 CTCCGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3851 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 3850 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 3791 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 3790 CTCGAGAACGTCATCC 3775 >seq208670 Length=3214 Score = 102 bits (112), Expect = 1e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3059 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3118 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| ||||| Sbjct 3119 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTCTTC 3178 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 3179 CTCGAGAACGTCATCC 3194 >seq178725 Length=858 Score = 96.9 bits (106), Expect = 5e-16 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | Sbjct 854 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGC 795 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| |||||||| ||| ||| |||| || ||| | ||| ||||||||||| Sbjct 794 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCTGTGACCTACACCGAGCACGCC 735 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| ||||| ||||||| ||||||| || | || | || ||||| Sbjct 734 CGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 679 >seq168900 Length=127 Score = 80.6 bits (88), Expect = 4e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | | Sbjct 123 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGT 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 || | ||| |||||||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 63 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78869954536026