Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq177117 105 6e-18 seq221835 100 3e-16 seq223142 89.7 5e-13 seq100797 87.8 2e-12 seq207513 84.2 2e-11 seq223622 82.4 7e-11 seq176952 82.4 7e-11 >seq177117 Length=2010 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || || || | |||||| |||| | || || Sbjct 1244 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 1303 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || ||||||||| ||||| || || || || |||||||| Sbjct 1304 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 1363 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | | | || |||||| || Sbjct 1364 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAA 1423 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || | || || ||||| Sbjct 1424 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCT 1456 >seq221835 Length=4727 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 2406 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2347 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 2346 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2287 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | || |||||| || Sbjct 2286 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2227 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 2226 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCT 2194 >seq223142 Length=9055 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | || ||| |||| | || || | | Sbjct 6326 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 6267 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || |||||| ||||| || || || ||||||||||| Sbjct 6266 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 6207 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 6206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 6147 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 6146 ATCCAGAAGGAGTCCACGCTCCACCTCGTCCT 6115 >seq100797 Length=331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||||||| |||| | || || | Sbjct 134 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 193 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || ||||| ||||| ||||| || ||||||||||| Sbjct 194 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 253 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | || ||||| ||| Sbjct 254 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCTGACTACAAC 313 Query 26949 ATTCAAAAAGAATCTACT 26966 || || || || || ||| Sbjct 314 ATCCAGAAGGAGTCGACT 331 >seq207513 Length=1179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 26761 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||| ||| ||||||| | || || || || | ||||| || | |||||| |||| | Sbjct 796 CAACCAACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTC 855 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || ||||||||||||| | || || |||||||| ||||| || || || || Sbjct 856 GAGTCGTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCC 915 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || || || || | ||||| | | |||||| || ||||| || | | | | | Sbjct 916 CCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCT 975 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || || ||| |||| || || || Sbjct 976 GACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 1016 >seq223622 Length=3914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 2371 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2312 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||||| ||||| || || || ||||||||||| Sbjct 2311 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 2252 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 || | ||||| | || || || || ||||| || Sbjct 2251 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 2217 >seq176952 Length=5663 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 917 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 976 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || || |||||| ||||| || || || || || || || Sbjct 977 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1036 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | || |||||| || Sbjct 1037 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 1096 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 1097 CATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477319261339040