Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq221835 109 5e-19 seq223142 107 2e-18 seq177117 107 2e-18 seq223622 100 2e-16 seq198453 95.1 1e-14 seq100797 95.1 1e-14 seq176952 91.5 1e-13 seq207513 89.7 4e-13 seq157834 84.2 2e-11 seq37846 84.2 2e-11 >seq221835 Length=4727 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| ||| Sbjct 2406 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2347 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 2346 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2287 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 2286 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2227 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 2226 CATCCAGAAGGAGTCGAC 2209 >seq223142 Length=9055 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| |||||| ||| | Sbjct 6326 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 6267 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || |||||| ||||| || ||||| ||||||||||| Sbjct 6266 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 6207 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 6206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 6147 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 6146 ATCCAGAAGGAGTCCAC 6130 >seq177117 Length=2010 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 1244 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 1303 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||||||| ||||| || ||||| || |||||||| Sbjct 1304 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 1363 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 1364 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAA 1423 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 1424 CATCCAGAAGGAGTCCACCCTTCA 1447 >seq223622 Length=3914 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 2371 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2312 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||||| ||||| || ||||| ||||||||||| Sbjct 2311 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 2252 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || || ||||| ||||| || Sbjct 2251 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 2217 >seq198453 Length=848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 600 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCMWS 659 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 660 YGACACSATCGAGAACGTSAAGCAGAAGATCCAGGACAAGGAGGGCATCCCYCCYGAYCA 719 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || || Sbjct 720 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 779 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 780 CATCCAGAAGGAGTCCACCCTTCA 803 >seq100797 Length=331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | | Sbjct 134 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 193 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| |||||||| ||||||||||| Sbjct 194 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 253 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 254 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 288 >seq176952 Length=5663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| ||| Sbjct 917 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 976 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || || |||||| ||||| || ||||| || || || || Sbjct 977 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1036 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||| ||||| || | | | | || ||| || || Sbjct 1037 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 1096 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 1097 CATCCAGAAGGAGTCCAC 1114 >seq207513 Length=1179 Score = 89.7 bits (98), Expect = 4e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| ||||||| | || || || || | ||||| || | || ||| |||| ||| Sbjct 796 CAACCAACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTC 855 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||||||||||| | || || |||||||| ||||| || ||||| || Sbjct 856 GAGTCGTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCC 915 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || || || ||| | || || | | ||||||||| ||||| || Sbjct 916 CCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||| ||| |||| |||||| | Sbjct 1033 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACGATCACCCTCGAGGTCGAGAGCTCG 1092 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||||| ||||| || ||||| ||||||||||| Sbjct 1093 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1152 Query 24111 CAGAGACTGATTTACGGCGGCAAGCA 24136 ||| | || || | || ||||||||| Sbjct 1153 CAGCGCCTCATCTTCGCCGGCAAGCA 1178 >seq157834 Length=139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 24030 ACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAA 24089 ||| ||||||||||| ||| ||||||||||||| | || || || ||||| ||||| Sbjct 2 ACCCTCGAAGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAG 61 Query 24090 GAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| || || || || ||| | || || | || || ||||| ||||| || Sbjct 62 GAAGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 117 >seq37846 Length=175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| |||| |||||| | ||||||||||||| | || || || ||||| | Sbjct 21 CGATCACCCTCGAGGTCGAGAGCTCCGACACCATCGAGAACGTGAAGCAGAAGATCCAGG 80 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| || ||||| || ||| | || || | || |||||||| ||||| | Sbjct 81 ACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGG 140 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 | | | | | | || ||| || ||||| || || Sbjct 141 ACGGCCGTACCCTCGCCGACTACAACATCCAGAA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428759749114710