Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq197527 334 2e-87 seq198488 105 2e-18 seq183536 105 2e-18 seq186837 86.0 2e-12 >seq197527 Length=40067 Score = 334 bits (370), Expect = 2e-87 Identities = 634/916 (69%), Gaps = 38/916 (4%) Strand=Plus/Plus Query 39223 GGCGACCTTCATCGCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGCGCTTCGT 39282 ||| | ||||| | |||| | ||| ||||| |||||||| ||||| |||||||| || Sbjct 24220 GGCCATCTTCAGGACCCGCAGCATCTCGGGATTGAGCAGGCCCCCGCCCACGCGCTTGGT 24279 Query 39283 CGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCCCGAT 39342 |||||||| | || || ||||| ||| | |||||||||||||| || || ||| | Sbjct 24280 GGTGTAGAAGTGGACATAGGGCTTGTTGGTGAAGGGATCGCGCAGCACCCGCACACCGGT 24339 Query 39343 GCGGTCGATGATCAGATA-CGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCGAGTTCG 39401 |||||||| |||||| || | | || |||||||||||||| | |||| | | | Sbjct 24340 GCGGTCGACGATCAGGTAGCCGCGGC-GGAAGTCGCCGAAGGCTACCGGCATGGCTCCGG 24398 Query 39402 CCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCT 39461 || || || |||||| ||| || |||||| ||||||||| || || || ||||| Sbjct 24399 GTGCGACGTCGGGCATGGCCGCCATCTCGGTCACCGGATAGGCCAGCACGTTCTGCGGCT 24458 Query 39462 GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCA 39521 | || | | | || || |||||||| ||||| || || |||||||| ||||| || | Sbjct 24459 GGCCTTCGGTGAAGGAGGGCTGCCAGAGGTAGTTGCCCTGACCGTCCTTGAGCTTGCGGA 24518 Query 39522 C-CTGACGCTGCGTGTTGCGGTTCATCGCGA--AG-CGGGCGTT----GCC-CGTGAACG 39572 || || ||||||||||||| |||| || |||||||| ||| | ||| || Sbjct 24519 TGCTTGCGA-GCGTGTTGCGGTTG---GCGACCAGACGGGCGTTCTGTGCCGCCTGACCG 24574 Query 39573 CGCTCGGCAGGTCGTAGACCAGATCGATGATGCCGTCCGACGTGATGTCTGCCGCCGCAC 39632 || || |||||| || ||||| | |||| | ||||| |||| ||||| Sbjct 24575 -----GGAAGCGAGTAGACGAGGTCGATCAACTCGTCGGCGGTGATC---GCCGTCGCAC 24626 Query 39633 ---CGCTGTTCACGACTTCGATGGCGCCGAACGGGTGCTTCGCGGCATTGGCACCGCCCG 39689 || | | | | |||| | || ||||||| | || || | || ||| Sbjct 24627 TCGCGGCGGTGATGGTCGGGATGCCTCCCCACGGGTGGGCAGTCGCCTTCGATCCACCCT 24686 Query 39690 CGATGTACGTAAGCAGCCCGTTCGGCTTGTTCGTGCCGTCGCCAGCGAGGAACGCTTTGC 39749 || || || || | ||| |||||||| ||||||||| |||| ||| || | | Sbjct 24687 CGGCATAGGTCAGGACCCCCGAGGGCTTGTTGACGCCGTCGCCCGCGACGAAGGCGATAC 24746 Query 39750 CTTCCTGCTTGGCGAACTCGGTCTGCACTTCGGTCGCGAGCCACGACTCGAGATCGATTT 39809 | ||||| | ||||||||||| || | ||| | |||| |||| |||||| | ||| Sbjct 24747 CCTCCTGGTAGGCGAACTCGGCCTCGATCTCGCTGGCGATCCACTGCTCGAGGTTGATCG 24806 Query 39810 CCGCGTCGTCGAGGATCTGCTGCGTAGCAGCCGGGTTCGCATAGATTTCGCCCGATGCGA 39869 | || || ||||| |||||||| || || |||| || || ||||| ||||||| | | Sbjct 24807 CGGCATCATCGAGCATCTGCTGGGTGGCGCCCGGATTGGCGTAGATCTCGCCCGGGGTGT 24866 Query 39870 AGCTCAGCGGCTGGAACGTAGCCGCGTTGGTCTGCGGACGCTGGCTTGCT-TCGCCGACC 39928 || ||| | ||| || | || | |||||||||| ||| ||| | | ||||||||| Sbjct 24867 AGTCCAGATGTCCGAAGGTCGGCGTGCTGGTCTGCGGCCGC-GGCGCGGTCTCGCCGACC 24925 Query 39929 CAGCCGCTCGTCG--TGCC---GCCCATATTGAAGAGCTTGGAGAAACCGGCCTTCGAAA 39983 ||||| | | || | || ||| | |||||||||| ||| || || ||| | Sbjct 24926 CAGCC-CGAGCCGAATCCCTGGGCCGA----GAAGAGCTTGCGGAAGCCTGCTCCCGAGA 24980 Query 39984 CCGGCTGGACGCGGCAGAGCTGGCGCATCGGCGAAATCAGAACGAGTTTGTTGGTGATCG 40043 || ||||||| | || ||||||||| ||||| | | || || |||| |||||| | Sbjct 24981 TCGTCTGGACGGAGGCGATCTGGCGCATGGGCGAGACCTCGACCAGCTTGTCGGTGATGG 25040 Query 40044 TACGATCCCACTCGATCGGCGTCAGGTATCCGCCTTCGCTGTCCTCGCCCTTGTTCAGCG 40103 | || ||||| |||| ||||| || || ||||||||| ||| ||||||||||||||| Sbjct 25041 TGCGGTCCCATTCGACCGGCGCGAGATAGCCGCCTTCGGCGTCAGCGCCCTTGTTCAGCG 25100 Query 40104 CGGCCTGCACGTCGCC 40119 | ||| || ||||| Sbjct 25101 CCGCCGAGACCTCGCC 25116 Score = 131 bits (144), Expect = 5e-26 Identities = 257/384 (67%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 40782 TCCATCATGGCGGCGGCCGTCTCTTCCGA--GATGCCGGCCCGTTGCG-CATACAGCTTT 40838 |||||| ||||||||| || | || || ||||||| | ||| | || | || Sbjct 25741 TCCATCCAGGCGGCGGCGACATC--CGGATCGACGCCGGCCT-TGGCGGCGTAGACCTCG 25797 Query 40839 GCCATTGCCGCATCGAACGGCGCGAGCGTCGCTGCAGCGGCCGCCATGTCGTGACGGTTC 40898 ||||| ||||||||||| || | ||| | || || || |||| |||||| ||||| Sbjct 25798 GCCATGGCCGCATCGAAGGGGATCATGGTCTCGGCCGCCGCGGCCAGGTCGTGGCGGTTG 25857 Query 40899 CCAATTGCGACGGCCCATGCGTTGTGAATCATCAGAAACGCGCCGTCACCNNNNNNNNNN 40958 || || ||||| |||| || ||||| | |||||| || || | || Sbjct 25858 CCGATGGCGACCACCCAGGCATTGTGGAGCATCAGGAATCCGGCACGGCCGATCTGGACC 25917 Query 40959 NNNNNNNNNNNNNNNGCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACC 41018 ||||| |||||||| || || || |||||||| | | | ||| Sbjct 25918 TCGTCGCCGGCCATGGCGATCACCGAGGCGGCGGAGGCGGCAAGCCCGAGGATGCGGACC 25977 Query 41019 GTTACCTTGGCCTTGTGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCG 41078 || |||||| || |||||||||||||||||||||||| ||||| || ||||||||| Sbjct 25978 GTGACCTTGCGTGGGTCCTCGCGCAGCAGGTTGTAGATCGCCACGCCCTCGAAGAAGTCG 26037 Query 41079 CCGCCGGGCGAATTGACGTTCACCGTGACTTCGCGCGCGCCGATGTTGCGAAGCGCCGCG 41138 |||||||| |||| || ||||||| ||| ||| ||| || || |||||| Sbjct 26038 CCGCCGGGGCTGTTGAGGTCGACCGTGATCTCGTCGGCGGTGATCGACCGCAGGGCCGCG 26097 Query 41139 CTGATCCGCTTCGCGGTGACGCCG 41162 ||| || || || || |||||| Sbjct 26098 GCGATGCGGTTGGCTGTCACGCCG 26121 >seq198488 Length=23545 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40974 GCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTG 41033 || ||||||||||| ||||| ||||| ||||| | | | |||||| || | | ||||| Sbjct 3853 GCAATGACCGAGGCGGCCGAGGCCGCGAGCCCGACGATGCGCACCGTGACATCGCCCTTG 3794 Query 41034 TGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTG 41093 ||| ||||||||| ||||||||| |||| || || || | ||||||||| || ||| Sbjct 3793 TGCCCGCGCAGCATGTTGTAGATGGCGAGCCCCTCGAACACGTCGCCGCCCGGGCTGTTG 3734 Query 41094 ACGTTCACCGTGACTTCGCGC 41114 | ||||||| || |||||| Sbjct 3733 ATGTTCACCACCACCTCGCGC 3713 >seq183536 Length=15448 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40974 GCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTG 41033 || ||||||||||| ||||| ||||| ||||| | | | |||||| || | | ||||| Sbjct 11596 GCAATGACCGAGGCGGCCGAGGCCGCGAGCCCGACGATGCGCACCGTGACATCGCCCTTG 11655 Query 41034 TGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTG 41093 ||| ||||||||| ||||||||| |||| || || || | ||||||||| || ||| Sbjct 11656 TGCCCGCGCAGCATGTTGTAGATGGCGAGCCCCTCGAACACGTCGCCGCCCGGGCTGTTG 11715 Query 41094 ACGTTCACCGTGACTTCGCGC 41114 | ||||||| || |||||| Sbjct 11716 ATGTTCACCACCACCTCGCGC 11736 >seq186837 Length=10810 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 39262 GCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATC 39321 |||||| ||||||||||| || | |||||||| || | |||||| |||| | | || || Sbjct 3099 GCCGCCACCGACGCGCTTGGTGGCATAGAACAGCACATGCGGCTTGGCCGAGAAGGGGTC 3040 Query 39322 GCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAA 39381 ||||||||| || | || || |||| ||| ||| | || |||||| ||||| Sbjct 3039 GCGCAGCACCCGCAGGTCGGGACGCTCGACGATGGTATAGCCCGACTTGAAGTCACCGAA 2980 Query 39382 GAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCC-GGCACCTCGGTAACCGGAT 39440 |||| | |||| || | ||| ||||||||| |||| | | ||||||| Sbjct 2979 CGCGATCGAGGCCGAGCCGTTGGCGATATCGGGCATGTCCTCGCACAGCAG-CACCGGAT 2921 Query 39441 AGCCCGCCAGCGTCGCCGGCTGCCCC 39466 ||||| |||| || |||||| ||| Sbjct 2920 AGCCCAGCAGCTGCGGCGGCTGGCCC 2895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143035288297512