Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq213195 127 1e-24 seq213115 105 4e-18 seq207513 95.1 8e-15 seq223622 86.0 4e-12 >seq213195 Length=1984 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 1553 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 1494 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1493 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1459 >seq213115 Length=3823 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2941 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2882 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 2881 GCTGACAATATTTAGCCTT 2863 >seq207513 Length=1179 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| |||||| || || ||||| |||| || ||| |||| || | || Sbjct 1007 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGC 948 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || |||||||| || ||||| || || || | ||||| ||| || |||||| || ||| Sbjct 947 TTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTT 888 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || || || | || || || || | || || || || || | Sbjct 887 TGCTTCACGTTCTCGATGGTGTCGGACGAC--TCGACCTCGAGGGTGATGGTCTTGCCAG 830 Query 38293 TCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| |||||||| || ||||| Sbjct 829 TCAGGGTCTTCACGAAGATTTGCAT 805 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || ||||| || || ||||| || ||||||| |||| ||| || |||||| || Sbjct 1178 TGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 1119 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||||| |||| || || || || || || || | || || || ||||| Sbjct 1118 TTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTACCG 1059 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 |||| ||| ||||| || ||||||||| Sbjct 1058 GTCAGGGTCTTCACAAAGATCTGCATG 1032 >seq223622 Length=3914 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | || || || || || || ||||| || ||||||| |||| ||| || | Sbjct 2215 CGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCT 2274 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| ||| ||||||||||| |||| || || || | || || || | || | Sbjct 2275 TGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGA 2334 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || |||| ||| |||||||| |||||||| Sbjct 2335 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334030826538542