Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq207513 125 6e-24 seq177117 120 3e-22 seq211431 87.8 2e-12 >seq207513 Length=1179 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| |||| || || ||||||| |||| || ||||| Sbjct 801 AACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTC 860 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| |||||| |||||||||| ||| ||||| || || || || ||||| Sbjct 861 GTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 920 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | || || ||| || || Sbjct 921 CCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCTGACTA 980 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || || Sbjct 981 CAACATCCAGAAGGAGTCGACTCTCCA 1007 >seq177117 Length=2010 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | ||||| || ||||||| |||| || |||||| Sbjct 1242 ACAATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 1301 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| |||||||||| || ||||| || || || || || || Sbjct 1302 TCCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGAT 1361 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || |||||||| || | || || | |||||| | | ||| ||| Sbjct 1362 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTAC 1421 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 1422 AACATCCAGAAGGAGTCCACCCTTCA 1447 >seq211431 Length=3216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 74 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 133 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 134 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 193 Query 25119 CAGCGGATTATTTTTGCCGGCAAACA 25144 ||||| | || || |||||||| || Sbjct 194 CAGCGTCTCATCTTCGCCGGCAAGCA 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432142469028830