Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq207413 127 2e-24 seq203897 127 2e-24 seq203896 127 2e-24 seq199157 127 2e-24 >seq207413 Length=2163 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 493 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 551 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 552 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 611 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 612 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 671 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 672 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 731 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 732 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 791 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 792 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 851 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 852 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 911 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 912 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 968 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 969 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1028 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1029 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1073 >seq203897 Length=2989 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 2111 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 2169 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 2170 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 2229 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 2230 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 2289 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 2290 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 2349 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 2350 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 2409 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 2410 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 2469 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 2470 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 2529 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 2530 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 2586 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 2587 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 2646 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 2647 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 2691 >seq203896 Length=2920 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 2042 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 2100 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 2101 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 2160 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 2161 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 2220 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 2221 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 2280 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 2281 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 2340 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 2341 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 2400 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 2401 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 2460 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 2461 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 2517 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 2518 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 2577 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 2578 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 2622 >seq199157 Length=2194 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 1702 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 1644 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 1643 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 1584 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 1583 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 1524 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 1523 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 1464 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 1463 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 1404 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 1403 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 1344 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 1343 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 1284 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 1283 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 1227 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 1226 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1167 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1166 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555298234673680