Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq223142 93.3 3e-14 seq177117 93.3 3e-14 seq207513 91.5 1e-13 seq198453 91.5 1e-13 seq194102 89.7 4e-13 seq216265 84.2 2e-11 seq209919 84.2 2e-11 seq190944 84.2 2e-11 >seq223142 Length=9055 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| ||||||||| |||||||| || ||| Sbjct 6100 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 6159 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 6160 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 6219 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 6220 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 6278 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 6279 CTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 6326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || || |||||| ||||||||| |||||||| || || | | || | Sbjct 6786 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGG 6845 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || |||||||||||||| || | || ||| Sbjct 6846 C-CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTC 6904 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | ||| | | || | || ||| |||| | Sbjct 6905 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATTGTGTCGGACGACTCGACCTCGAGGG 6963 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| || || ||||| ||||| |||||| || Sbjct 6964 TAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTT 7007 >seq177117 Length=2010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | || Sbjct 1462 AGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 1403 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| || | || ||| Sbjct 1402 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCC 1343 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| |||||||| | | ||| | | || | || ||| |||| || Sbjct 1342 TTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGT 1284 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || ||||| || || || || |||||||||||| Sbjct 1283 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 1244 >seq207513 Length=1179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 1031 CCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCC 972 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||||||||| || ||||||||||| || || Sbjct 971 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 912 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || |||||||| | | ||| | | || | || ||| Sbjct 911 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGAC 853 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || || || || || ||||| |||||||||||| || Sbjct 852 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTGTT 801 >seq198453 Length=848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 828 ACCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 769 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||||||||| || || ||||||||||| || || Sbjct 768 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGRTCRGGRGG 709 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||||| | | ||| | | || || ||| Sbjct 708 GATGCCCTCCTTGTCCTGGATCTTCTGCTTSA-CGTTCTCGATSGTGTCRSWKGACTCGA 650 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || ||||| || || ||||| ||||| |||||| || Sbjct 649 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 597 >seq194102 Length=976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| |||||| || |||||||| || ||| Sbjct 59 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCC 118 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 119 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 178 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | ||| |||||| || || ||||| | | ||| | |||| | || ||| Sbjct 179 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGAC 237 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 238 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 >seq216265 Length=25441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||| || || |||||| ||||||||| |||||||| || ||| Sbjct 16260 CCGCCGCGCAGACGGAGCAAGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 16319 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||||||||| || || ||||||||||| || ||| Sbjct 16320 AGGGTGCCCCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 16379 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 16380 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 16408 >seq209919 Length=3227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| |||||||| || |||| || Sbjct 2354 AGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGA 2295 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || || | || ||| Sbjct 2294 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 2235 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | |||| || ||| |||| || Sbjct 2234 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCAGATGACTCGACCTCGAGGGT 2176 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| ||||| |||||| || Sbjct 2175 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 2133 >seq190944 Length=484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 453 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 394 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 393 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 334 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | ||| | | |||| | || ||| Sbjct 333 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CATTCTCGATAGTATCGCTGGACTCGAC 275 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || |||||||| ||||| Sbjct 274 CTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395976087154564