Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq199262 161 3e-35 >seq199262 Length=27203 Score = 161 bits (178), Expect = 3e-35 Identities = 247/347 (71%), Gaps = 9/347 (3%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAA---CACGGT 42708 |||| |||| | ||| || ||||| ||| | | ||| ||||| ||| ||| Sbjct 24411 GCCCGCCGCAAAGGCATTCACCAGGCAGTTGCCGTCATACGAGGCATGGAAGCGCAC--- 24355 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGA-GGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGA 42767 |||||| || | |||||||| |||| |||| ||||| ||| || ||| || | | Sbjct 24354 CTCGCCCCCCACGTTCGGCACGCCGAAGGCA-TTGCCATAGGCGCCGATCCCCTCGACCA 24296 Query 42768 CGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCA 42827 |||| | || | |||| || | ||||| |||| | |||||||| || | |||| Sbjct 24295 CGCCCTTGACCAGATGCGCGGTCTTGGGGTGTTCGGGCCGGCCGAAGCTGAGCGAATCCA 24236 Query 42828 TGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCG 42887 || | |||| ||||| |||||||||| || || ||||| | |||||||||||| || | Sbjct 24235 TGGCGGCGATGGGGCGCGCGCCCATGGTGAAGACATCGCGCAGGATGCCGCCCACGCCGG 24176 Query 42888 TCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACG 42947 |||| ||||||||| |||||||| | ||||||||||| |||||| |||||| Sbjct 24175 TCGCAGCGCCCTGGTGCGGCTCGATATAGCTCGGGTGGTTGTGGCTCTCCATCTTGAAGA 24116 Query 42948 TGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT-GCCC 42993 || ||| || ||||||| ||| | ||||||||||||| |||| Sbjct 24115 CAACGGCCTGGCCGTCGCCGATGTCCACAACGCCCGCGTTCTCGCCC 24069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147851216050668