Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq186304 237 7e-58 seq55252 93.3 2e-14 >seq186304 Length=18897 Score = 237 bits (262), Expect = 7e-58 Identities = 360/499 (72%), Gaps = 20/499 (4%) Strand=Plus/Plus Query 60063 CCGTACACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCA 60122 || || ||||| | | ||||| || ||||| ||| ||| |||| || |||||| Sbjct 1199 CCATAGACCTTTTCCACGTCATGGGGCGAGAACAGGTACATGTCCTCGTTCCGCTTGGCC 1258 Query 60123 AGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTC 60182 || ||| || || || || | || || || || || || ||||| || |||||||| Sbjct 1259 AGTTCGAAGGTCACGTCCGGTATGACGACGCCCAGCGACAGCGTCTTGATGCGGATCTTT 1318 Query 60183 TCGTCGGCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTT 60241 ||||| ||||| || |||||||| ||||| || |||| |||||||||| ||||| ||||| Sbjct 1319 TCGTCCGCGTTCTCGCGCTTGGTGTCCAGAAAGCGCA-GGATGTCGGGATGGTGCGCGTT 1377 Query 60242 CAAATATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATC 60301 || ||| ||||| || || ||||||| || ||||| ||||| | ||| |||||| || Sbjct 1378 CAGATAGACCGCGCCCGCCCCCTGCCGCGCGCCCAGCTGGTTGGCATAGCTGAAGCTGTC 1437 Query 60302 TTCTAGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--CCCTTAATC 60359 || || | ||||||||| |||||||| || |||| ||| ||||||| ||||| || Sbjct 1438 CTCCAGCAGCTTCATCACCGGGATGACGCCCGAGGACTG--GTTCTCGATCCCCTTGATG 1495 Query 60360 GGAGCTCCTGCCTCGCGGAGGTTGG--AGAATCCAATGCCGACTCCGCCACCACGCTTAG 60417 || || || |||||||||| ||||| || || || ||| || ||||| || ||||| | Sbjct 1496 GGCGCGCCGGCCTCGCGGATGTTGGTCAGCAT-CAGCGCC-ACGCCGCCGCCGCGCTTGG 1553 Query 60418 ACAGCTGGAGAGA-GTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCG 60476 |||| || || || | ||| || || ||||| || ||||| |||||| || Sbjct 1554 ACAGTTGCAGCGACGAATTGATCG-CCCGGCCGATCGATTCCATGTTGTCCTCGACCCGC 1612 Query 60477 AGGATGAAGCATGATACTGGCTTG-CCTGCG---TCGAGAAGCCCCGCGTTGAGGAAGGT 60532 || | |||||| || | | | | || ||| || | || |||||||| ||||| Sbjct 1613 AGCAGGAAGCAGGAAATCAGTTCGCCCCGCGATTTCTTG----CCGGCGTTGAGAAAGGT 1668 Query 60533 CGGAGTTGCAGGCTGGAAG 60551 ||| || || ||||||||| Sbjct 1669 CGGCGTCGCGGGCTGGAAG 1687 >seq55252 Length=1842 Score = 93.3 bits (102), Expect = 2e-14 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 57382 CTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGCGGAT 57441 |||| |||| || || | ||||||||||||||| ||||||| | ||||| || ||||| Sbjct 1169 CTGGTATTTGTAGCCGATGTAATAGCCATGCACCGCCTCGTCGCGGATGATCAGACGGAT 1228 Query 57442 AAGGTCCGCTGTGTTGGTGAGTTTACCTTGAGAGGCGA--AGTGAAGAGGGAGATAGAAG 57499 ||||| || |||||||| || || | | | ||| ||| | || ||||||||| Sbjct 1229 CAGGTCGGCGGTGTTGGTCAGCTT--CGCGCGGCTCGACCAGTACATGGGCAGATAGAAG 1286 Query 57500 CCGGTATAGAACAAGAATGATTCCAGGAGGACAGAGG 57536 || | |||||||| ||| |||||||| || |||| Sbjct 1287 CCCGAATAGAACATGAAGCTTTCCAGGAACACCGAGG 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225110436549080