Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq207413 131 4e-25 seq203897 131 4e-25 seq203896 131 4e-25 seq199157 131 4e-25 >seq207413 Length=2163 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1034 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 975 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 974 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 918 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 917 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 859 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 858 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 800 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 799 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 740 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 739 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 684 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 683 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 624 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 623 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 564 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 563 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 504 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 503 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 444 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 443 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 388 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 387 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 330 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 329 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 270 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 269 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 210 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 209 GGCAAGACCAACTTCTTCGAA 189 >seq203897 Length=2989 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2652 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 2593 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 2592 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 2536 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 2535 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 2477 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 2476 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 2418 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 2417 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 2358 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 2357 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 2302 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 2301 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 2242 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 2241 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 2182 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 2181 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 2122 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 2121 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 2062 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 2061 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 2006 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 2005 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1948 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1947 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1888 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1887 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1828 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1827 GGCAAGACCAACTTCTTCGAA 1807 >seq203896 Length=2920 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2583 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 2524 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 2523 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 2467 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 2466 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 2408 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 2407 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 2349 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 2348 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 2289 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 2288 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 2233 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 2232 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 2173 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 2172 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 2113 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 2112 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 2053 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 2052 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 1993 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 1992 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 1937 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 1936 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1879 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1878 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1819 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1818 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1759 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1758 GGCAAGACCAACTTCTTCGAA 1738 >seq199157 Length=2194 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1161 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 1220 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 1221 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 1277 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 1278 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 1336 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 1337 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 1395 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 1396 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 1455 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 1456 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 1511 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 1512 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 1571 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 1572 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 1631 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 1632 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 1691 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 1692 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 1751 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 1752 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 1807 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 1808 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1865 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1866 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1925 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1926 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1985 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1986 GGCAAGACCAACTTCTTCGAA 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099707923426700