Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq179470 80.6 1e-10 >seq179470 Length=35510 Score = 80.6 bits (88), Expect = 1e-10 Identities = 147/215 (68%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 4996 CGAGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAACAGATGGGGGAGGA 5055 ||||||| |||| ||||| | || ||| || ||| | | ||| | |||| || Sbjct 8229 CGAGGCCAGGCTGATCGTGCTCGACGAGGTGTCGATGGTCGGCGAGGAAATGGCCCGCGA 8170 Query 5056 CTTGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCC--- 5112 | || | |||||||| |||||||||| ||||||||||| || ||||| ||||| Sbjct 8169 CCTGATGAGCTTCGGCAAGCCGATCCTCGTGCTGGGCGATCCCGGCCAGCTGCCGCCGAT 8110 Query 5113 CGTGGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCG 5172 | ||||| | ||||| | | ||||||| || |||| || ||||| ||||| Sbjct 8109 CAAGGGCGAAGGCGCCTTCACCCGCGATGCGCCCGACGTCATGCTGACCGAGATCCACCG 8050 Query 5173 CCAGGCCCAGGACAACCCGATCATCTGGATGTCCA 5207 ||||| ||| | | | |||||| || || ||| Sbjct 8049 TCAGGCGGCGGAAAGCGCCATCATCCGGCTGGCCA 8015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187099910224500