Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq186837 113 2e-20 seq197527 102 3e-17 >seq186837 Length=10810 Score = 113 bits (124), Expect = 2e-20 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 21902 GAGATCCCGAACGACCTCGGCGAATTCGACGCTGGTTGGGTTGGCGAGACCGAGAGCCGC 21961 ||||| | | |||| | ||||| ||| | || |||| |||| ||| | || Sbjct 2389 GAGATGCTGGTCGACATGGGCGACATCGCCAGCGGCTGGGCGACCGAGGCCGCGGCCCAG 2448 Query 21962 GGCGAGACCGCCACCTCCACGCT---CGGCGTTCTGCGCATCCCGGTCCACGAGATCTAC 22018 | |||||||| |||| | || | | |||| || ||||||||||||||| | | Sbjct 2449 GCCGAGACCGGCACCGCGACCGTGACCCGCGTGGTG---ATCCCGGTCCACGAGCTGTCG 2505 Query 22019 GCGAAGCCGAAGGCGACGCAGAAGATGCTGGAAGATGCGTCGATCAACGTCGAAGTGTGG 22078 || | ||||||||| | ||| ||||||| || ||| | || |||||||| ||| Sbjct 2506 GCCATGCCGAAGGCCAGCCAGCGCCTGCTGGACGACGCGGCCTTCGACGTCGAAAGCTGG 2565 Query 22079 CTTGCCGGCAAGATCGCCGACAAGTTCGCTCGCACCGAGGCGTCGGCGTTCATCTCCGGT 22138 || || ||| |||||||||||||||| ||| |||||||| | || |||||| ||| Sbjct 2566 CTGGCTGGCCGGATCGCCGACAAGTTCATCCGCGCCGAGGCGACCGCCTTCATCAGCGGC 2625 Query 22139 GACGGCGTCAAAAAGCCCCGCGGCATCCTGAC 22170 |||||| || |||||| || ||||||| Sbjct 2626 GACGGCACGAACAAGCCCAAGGGGTTCCTGAC 2657 >seq197527 Length=40067 Score = 102 bits (112), Expect = 3e-17 Identities = 182/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 21925 ATTCGACGCTGGTTGGGTTGGCGAGACCGAGAGCCGCGGCG--AGACCGCCACCTCCACG 21982 ||||| | | || ||||| |||||||||| | ||||||| ||||| ||| | || Sbjct 24940 ATTCGGCTCGGGCTGGGTCGGCGAGACCGCG--CCGCGGCCGCAGACCAGCACGCCGACC 24883 Query 21983 CTCGGCGTTCTGCGC---ATCCCGGTCCACGAGATCTACGCGAAGCCGAAGGCGACGCAG 22039 |||| |||| | | ||||| | ||||||||||| || ||| || || ||| Sbjct 24882 TTCGGACATCTGGACTACACCCCGGGC---GAGATCTACGCCAATCCGGGCGCCACCCAG 24826 Query 22040 AAGATGCTGGAAGATGCGTCGATCAACGTCGAAGTGTGGCTTGCCGGCAAGATCGCCGAC 22099 ||||||| || ||||| |||||||| |||| |||| | ||| || |||||| | | Sbjct 24825 CAGATGCTCGATGATGCCGCGATCAACCTCGAGCAGTGGATCGCCAGCGAGATCGAGGCC 24766 Query 22100 AAGTTCGCTCGCACCGAGGCGTCGGCGTTCATCTCCGGTGACGGCGTCAAAAAGCCCCGC 22159 ||||||| | |||| || ||| || | || ||||||||||| |||||| Sbjct 24765 GAGTTCGCCTACCAGGAGGGTATCGCCTTCGTCGCGGGCGACGGCGTCAACAAGCCCTCG 24706 Query 22160 GGCATCCTGACATAT-CCGAG 22179 || ||||||| ||| ||||| Sbjct 24705 GGGGTCCTGACCTATGCCGAG 24685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198808193594196