Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq211828 389 4e-103 seq178273 98.7 1e-15 >seq211828 Length=4713 Score = 389 bits (430), Expect = 4e-103 Identities = 931/1394 (67%), Gaps = 48/1394 (3%) Strand=Plus/Plus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | |||||| ||||||| |||| ||||||||||||||||||||| | Sbjct 622 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 681 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 682 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCCCGCGAT 738 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 |||||||||| || ||| | || ||||| || ||||| ||||| |||| | || | Sbjct 739 CTCTTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGAC 798 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||| || ||||| ||||| || ||||| |||| |||| || || | || Sbjct 799 TGGTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTC 858 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCT 94449 || || ||| | || ||||| | ||||| || | | ||| | || | Sbjct 859 GAGGAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGC--CC 916 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 |||| ||||||| ||| | || ||| | ||||| || ||||||||||| || Sbjct 917 AGGA-GCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTG 975 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | ||||||| | ||||| |||||||||||||||||||||||| ||| || ||| Sbjct 976 TACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCG 1035 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| ||| | ||| |||| || || || |||||| | || ||||| |||||| Sbjct 1036 AACCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTG 1095 Query 94630 GGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGAT 94689 | ||| || ||| ||| ||| | ||| | || || ||| || Sbjct 1096 GCCTCGCTCGCGCTGCCCAAGTTCAT------------CAC--CAACGGCGA-GTTTGAC 1140 Query 94690 CTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGGTCTT---GAACCTGAACAGGGTAAT 94745 | || |||| | || || || ||||| ||||| |||||| |||| ||| || Sbjct 1141 CACCAGAAGCT---GCACGACGTCGTGAAGG-TGGTCACCAAGAACCTCAACAAGGTGAT 1196 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| |||| ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 1197 CGACATCAACTACTACCCCGTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCAT 1256 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 ||||||||| || ||||| | || |||| | |||| ||||| | || | || Sbjct 1257 CGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGAGAG 1316 Query 94866 TGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGA 94924 | ||| || ||| | | | | ||| ||||| | ||| || |||| ||| || Sbjct 1317 CGACGAGGCCCGCGAGCTCAACCGCGC-CATCTTCGAGACCATCTACTACGCCGCCCTGG 1375 Query 94925 AACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 || | | | || ||| ||| | ||| | || || | | | || ||| Sbjct 1376 TCGCCTCGAACGAGCTCGCGCAGGTCG-AGGGCAC-CTACCAGA--CCTACGAGGGCTCG 1431 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | |||||| | ||| |||||||||||| || ||| |||| || Sbjct 1432 CCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGG 1491 Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| | | | | |||||| || ||| |||| || ||| Sbjct 1492 GACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTG 1551 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || ||||||||||||||||| || |||||||||| ||||||||||||| || || ||| Sbjct 1552 GCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCC 1611 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| | |||| | | || | |||||||| || ||| ||||| ||||| || Sbjct 1612 TACACGACCAACATCTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAG 1671 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||| || || || || | | || | ||| | | |||||||| | || Sbjct 1672 CACCTTCTGCGCGAGCTCCAGCAGCGCGGCCTCTGGTCGCCCGCGCTCAAGAACAAGCT- 1730 Query 95284 CTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCT 95342 | | ||| ||||||||| |||||| |||| | | || || || ||||||||| ||| Sbjct 1731 CGTCTCGCACAACGGCTCGGTCCAGCGCATCGAGGAGATCCCCGACGACATCAAGAAGCT 1790 Query 95343 CTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||||||||||||||| ||||||||||||| || ||||| || |||| ||| Sbjct 1791 GTACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTC 1850 Query 95403 GCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CGGA 95460 | ||| |||| |||||| |||| ||||||| ||| | Sbjct 1851 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTTGCC 1908 Query 95461 AAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTAT 95520 || | || || ||| ||||||| ||| | ||||| ||||||||||| ||||| || Sbjct 1909 AAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 1968 Query 95521 TTGCGAACCAGGCC 95534 | || ||| |||| Sbjct 1969 CTTCGCACCCGGCC 1982 Score = 176 bits (194), Expect = 4e-39 Identities = 300/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || || ||| || |||||| ||| | | || |||| | | | Sbjct 99 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCAGGGTCGACGGCAAGATCGTC 158 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || |||| |||||||| |||||||| | ||| || |||| || Sbjct 159 GAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCCCC 218 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 219 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 278 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || |||||| || ||| |||| ||||| |||||| | || | ||| Sbjct 279 CTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 338 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||||| ||||||| | || || |||||| || | Sbjct 339 GAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCG 398 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 399 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 458 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 459 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 518 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 519 TACGTCGACCAAGGT 533 >seq178273 Length=18186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/345 (67%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| ||| ||| | ||||| |||||||||||||||||| ||||| ||||||| | Sbjct 6723 ACGGCATGAGGAACTCCCTGCTGACGGCCCCCATGCCCACGGCGTCCACCTCGCAGATAC 6782 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | |||||| |||| ||||||| | ||| |||| | |||| | ||||| || Sbjct 6783 TGGGCAACGTCGAGAGCATCGAACCGTACACGAGCAACATCTACACGCGACGGGTCAGCG 6842 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGT 95257 | || || || | |||||| |||||| | |||| || || ||||| ||| Sbjct 6843 CTGGCGACTTTGTCCAGATCAACCTCCACCTCGTGAGGGAGCTTCGTTCGCTGGGACTGT 6902 Query 95258 GGGGTGACAAGGTCAAGAACC--AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 || | | |||| ||| | | | ||||| | || || ||||||| | || Sbjct 6903 GGTTGGCTGAACTCAACTACCGCATCGTCGGCGCGCGA--GGTTCGGTCCAGACCTTCGA 6960 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 | | || | ||| ||||| | ||||||||||||||||||||| |||| || || Sbjct 6961 CGAGCTGCCTGCCGACGTCAAGCTGAGATACAAGACCGTGTGGGAGATCTCGCAACGTGT 7020 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 | | | ||| |||| | |||| ||||| |||| |||||| Sbjct 7021 GCTCATTGACATGGCGGAGGATCGCGCGCCCTACATCGACCAGAG 7065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493334994332720