Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq55252 691 0.0 seq194362 93.3 4e-14 seq186304 93.3 4e-14 seq180639 93.3 4e-14 seq180638 93.3 4e-14 >seq55252 Length=1842 Score = 691 bits (766), Expect = 0.0 Identities = 734/961 (76%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 155932 CGCGCCATCAACTGGAACCG-CGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCT 155990 || || |||||||||||||| | ||| |||||||||||| |||||| |||||||| || Sbjct 1765 CGGGCGATCAACTGGAACCGGCTTGAG-GACGAGAAGGACCTGGAGGTCTGGAACCGCCT 1707 Query 155991 GACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCA 156050 ||| |||||||||||||| || ||| | ||| |||| |||||||| || ||| Sbjct 1706 GACGGTGAACTTCTGGCTGCCCGAAAAGGTGCCGCTGTCGAATGACGTGCAAAGCTGGGC 1647 Query 156051 CCAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCT 156110 | |||| | || |||| | | ||||| || || || ||||| |||||| |||| Sbjct 1646 CACGCTGCGCCCGGCCGAGCAGACGCTGACCATCCGCGTCTTTACCGGGCTGACGCTGCT 1587 Query 156111 GGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCA 156170 ||||| |||||| |||||| |||||| |||| | || || |||||| | |||||||| Sbjct 1586 TGACACGATCCAGAACACCGTTGGCGCGCCCTCGATGATGCCCGACGCCGTGACCCCGCA 1527 Query 156171 CGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTC 156230 ||| ||||||||| | |||||||| ||||||||| |||||||| |||||||| || Sbjct 1526 CGAAGAGGCGGTGCTTTCGAACATCGCCTTCATGGAGGCGGTGCACGCGCGCAGCTATTC 1467 Query 156231 GAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGA 156290 | ||||| |||||||||||| ||||||||| ||||||| || ||||||||| | || Sbjct 1466 GTCGATCTTTTCGACGCTGTGCAGCACCAAGGAAATCGACGAGGCCTTCCGCTGGGCCGA 1407 Query 156291 GGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAA---CGGTGA 156347 ||||||| | | ||||| ||||| | | ||||| | ||||| ||| | Sbjct 1406 GGAGAACCCGCATCTGCAAGCCAAGGCGCGGCTGGTGCTTGAGAAATACAAGGCCGGCGC 1347 Query 156348 CGACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGG 156407 ||| ||||| ||||||||| ||||||| | | ||||| ||||| ||||||| || Sbjct 1346 CGATCCGCTGAAGCGCAAGATCGCCTCGGTGTTCCTGGAAAGCTTCATGTTCTATTCGGG 1287 Query 156408 CTTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGAT 156467 |||||| ||||| |||| ||||||| || | ||||| ||||||||||||||| |||| Sbjct 1286 CTTCTATCTGCCCATGTACTGGTCGAGCCGCGCGAAGCTGACCAACACCGCCGACCTGAT 1227 Query 156468 CCGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAA 156527 ||| || |||||||| |||||||| ||||| ||||| |||||||||||||| | |||| Sbjct 1226 CCGTCTGATCATCCGCGACGAGGCGGTGCATGGCTATTACATCGGCTACAAATACCAGCG 1167 Query 156528 GGGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCT 156587 || || ||| | | ||||||| | |||||||||||||||| | ||| || ||| Sbjct 1166 CGGGCTTGAGGCTCTGGACGAGGCCCGGCGCCAGGAACTCAAGGACTTCGCCTTTGCGCT 1107 Query 156588 GCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGG 156647 | ||||||| || | ||||| |||| | | |||||| || || ||||||| || ||| Sbjct 1106 GATGTTCGATCTTTACGACATCGAGGCGAAATACACCGCCGAGCTTTACGACGGCATCGG 1047 Query 156648 CCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCT 156707 || |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||| Sbjct 1046 CCTGACCGAGGACGTCAAGGCCTTCCTGCACTACAACGCCAACAAGGCCCTGCAGAACCT 987 Query 156708 GGGCTACGACGCGCTGTT-CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCCTGAGCG 156766 ||||||||| |||||||| | ||| ||| | |||||| ||||| ||||| |||||| || Sbjct 986 GGGCTACGAGGCGCTGTTCCCGCCCCAG-GCCTGCGAGGTCAATCCGGCGATCCTGGCCG 928 Query 156767 CGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACG 156826 |||| ||||||| | ||| |||||||||||||||||||||||||| | || | Sbjct 927 CGCTTTCGCCCGACAG---CGAAAACCACGACTTCTTCTCGGGGTCGGGGTCGAGCTATG 871 Query 156827 TCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATGGCTCGCCGTGA 156886 |||| | ||||| || | ||||| || || || ||||||||||||| | |||| ||| Sbjct 870 TCATCGGCAAGGCGGTCGCGACCGAGGATGAGGATTGGGACTTCTGATCCCGCGCCATGA 811 Query 156887 C 156887 | Sbjct 810 C 810 >seq194362 Length=24653 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 24429 GCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 24488 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 24489 CCTGCCCCCGCAAC 24502 >seq186304 Length=18897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 18673 GCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 18732 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 18733 CCTGCCCCCGCAAC 18746 >seq180639 Length=8005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 5747 GCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 5806 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 5807 CCTGCCCCCGCAAC 5820 >seq180638 Length=39462 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 225 GCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 166 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 165 CCTGCCCCCGCAAC 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525120751724640