Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq208634 224 4e-54 >seq208634 Length=57299 Score = 224 bits (248), Expect = 4e-54 Identities = 549/817 (67%), Gaps = 40/817 (5%) Strand=Plus/Plus Query 42720 CGGCAAACCGGTGATGCTCGGGCAGGGCATGAACCTGCAACAGGCACA-CACCTG---CG 42775 || ||| || |||||||| ||| |||| |||||||| | |||| | |||| || Sbjct 42305 CGCCAAGCCCGTGATGCTGGGGTCCGGCACCAACCTGCAGC-GGCATTGCGCCTGGTCCG 42363 Query 42776 TCTACATCGGCATCACACACAAGTTCAACGACCTCATCCAAAGCCTGCACCGGATCCAGC 42835 | | | | |||||| ||||||||||||| ||||||| | || ||| | | || Sbjct 42364 TGTTCCTGGGCATCGGCTTCAAGTTCAACGACTTCATCCAGGCGGTCCATCGGCTGCGGC 42423 Query 42836 GGTTCGGCCAAACCCACCCCTGCA--CAGCCCATC-TCATCCACTCCGAAACCGAACGGG 42892 | ||||| || | | | | || | || | | | ||| || |||| |||| || | Sbjct 42424 GCTTCGGGCAGATCGCCGACAGCGTGCGGCTCGACATGATCTACACCGAGGCCGAGCGCG 42483 Query 42893 AAGTGGTTCGCATCATCCGCGAGAA-----ATGGGCACAACACCGAGAGTTGACATCA-A 42946 | ||| ||| | ||| |||| |||| || ||| ||| || ||| | Sbjct 42484 A---GGTCCGCCGCT--CGCTAGAACGCAAATGGCGCCAGCACAACGAGATGGT-TCAGA 42537 Query 42947 CGATGACCGACATCATCCACGAATACGGGCTTGACCCCGAG---GCAATCTCGGAAGCGC 43003 ||||| ||||||| || | |||||||| || | |||| || || | | |||| Sbjct 42538 AGATGATCGACATCGTCAAGGAATACGGCCT---CAGCGAGATTGCCATGCAGCAGGCGC 42594 Query 43004 TGCAACGCTCCATCGGATGCGAACGCATCGAAGCATCCGGCGAGGG--ATGGCTGTTCGC 43061 || ||| || | || ||| || |||| || || ||| || || |||| || Sbjct 42595 TGGTCCGCGCCTTGGGCGTCGAGCGGGTCGAGGCCTCGGGCCCGGACTATCGCTG--CGT 42652 Query 43062 CAACAACGACTGCGTACCCGAAACCGAGTCGATGGACGACAACTCGGTGGACCTGATCGT 43121 | ||||||||||||| |||| ||| || |||| ||| ||||||| | |||||||| Sbjct 42653 CCACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGT 42712 Query 43122 CACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTACAACGACTTCGGCCA 43181 |||| || |||||| | ||| |||||||||| |||| ||| |||||||||||| Sbjct 42713 CACCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCA 42772 Query 43182 CACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACGCCGCAACTGCTGCG 43241 |||||||||| ||| ||||||||| ||||||| || || || |||||||||| Sbjct 42773 CACCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCG 42832 Query 43242 GGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAA 43301 || || | || ||||||||| || ||||||||||||||| ||| | ||| Sbjct 42833 CGTTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGG 42892 Query 43302 CGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGCCGA-----GGCGATCTTT 43356 | ||| ||| || | | ||| |||| || | ||| || ||| || Sbjct 42893 CATCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTT 42952 Query 43357 CACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTG 43416 | | ||| || ||||| | ||| |||||||||| ||| | ||| || |||||| Sbjct 42953 CCAG--CGC---CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTG 43007 Query 43417 CGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAG 43476 || || ||||||||||| || || ||||||||| ||||||| ||||| |||| | | Sbjct 43008 CGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGC 43067 Query 43477 ATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCC 43513 |||||| |||| ||||||||| | ||| | |||| Sbjct 43068 ATGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCC 43104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186752040028944