Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01-
08] 224,482 sequences; 120,415,301 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq215275 96.9 3e-15
seq190944 82.4 7e-11
>seq215275
Length=6875
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || ||| || || || ||
Sbjct 4230 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCG 4171
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | || | || ||||||||||| |||||||| || || || ||
Sbjct 4170 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 4111
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || || |||| || | || | |||||| |||||||| |||||||||| ||| ||
Sbjct 4110 ATCTTCTGCTTGA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTT 4052
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| ||||| || || || || |||||
Sbjct 4051 GCCGGTAAGAGTCTTGACGAAGATCTGCAT 4022
>seq190944
Length=484
Score = 82.4 bits (90), Expect = 7e-11
Identities = 161/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || || || || || || ||||| ||||| || || |||
Sbjct 453 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 394
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || || | || || || ||| | || | || ||||||||||| ||
Sbjct 393 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 334
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||| || || || || || || || || | || | || ||| ||||||||
Sbjct 333 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATAGTATCGCTGGACTCGACC 274
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|||||||| | ||| |||||||| || || || ||||| || ||||| ||| || ||
Sbjct 273 TCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCATACCGCCACGAA 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450734867720720
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |