Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq211828 145 9e-30 seq207413 107 2e-18 seq203897 107 2e-18 seq203896 107 2e-18 seq199157 107 2e-18 seq185390 84.2 3e-11 >seq211828 Length=4713 Score = 145 bits (160), Expect = 9e-30 Identities = 649/1013 (64%), Gaps = 30/1013 (3%) Strand=Plus/Plus Query 111987 CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 |||||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 634 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 693 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 694 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 753 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 |||||||| || || ||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 754 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 813 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || || |||| ||||| || | ||| | ||| ||||||| || | ||| Sbjct 814 CCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 873 Query 112227 AAGTACGAGGAAGAAAGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 112282 |||||| | || | || ||| | ||| ||| | || ||| || ||||| Sbjct 874 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 929 Query 112283 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTG 112342 || || ||| |||| || | |||||| || || || || ||||| ||||| |||||||| Sbjct 930 CGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 989 Query 112343 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGA 112402 ||| ||| || || || | | || ||| || || ||||| || || || Sbjct 990 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 1049 Query 112403 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 112462 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 1050 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 1109 Query 112463 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 112522 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 1110 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACCAGAAGCTGCACGACGTCGT 1163 Query 112523 GAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 112579 ||| ||||| || ||||| |||| || || || | || | |||||||| || Sbjct 1164 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 1223 Query 112580 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGC 112639 | || || || || || ||| | ||| | || || || |||| || || || || || Sbjct 1224 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 1280 Query 112640 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 112698 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 1281 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 1340 Query 112699 CGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAG 112755 ||| || || ||||| || || ||||||| || | || ||| ||| | || Sbjct 1341 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGC---CTCGAACGAGCTCGCGC 1396 Query 112756 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAA 112814 |||| || || | || | |||| ||||| || || || || |||||| ||| || Sbjct 1397 AGGTCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAG 1455 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGC 112874 || | |||| | | | | | | ||||||| | | ||| | | Sbjct 1456 CCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAAC 1515 Query 112875 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 112934 ||| || | ||||| || ||| || | |||| || ||||| || ||||| ||| Sbjct 1516 ATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACC 1575 Query 112935 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 1576 TCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 1628 Score = 82.4 bits (90), Expect = 9e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||||| | || ||| | || | || Sbjct 165 CCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCCCCGCCGTG 224 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| |||||| |||| | | |||| |||||| || || || |||||| Sbjct 225 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 284 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || | || || |||| || ||||| | | | |||||||| Sbjct 285 AACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 344 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||| | ||||| |||| ||| |||| | || |||| ||||| |||| ||| || Sbjct 345 TCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGC 404 Query 111852 GGTATCGG 111859 || ||||| Sbjct 405 GGCATCGG 412 >seq207413 Length=2163 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 716 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 657 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 656 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 598 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 597 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 538 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 537 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 478 Query 102314 ACTCCAC 102320 |||||| Sbjct 477 CCTCCAC 471 >seq203897 Length=2989 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 2334 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 2275 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 2274 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 2216 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 2215 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 2156 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 2155 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 2096 Query 102314 ACTCCAC 102320 |||||| Sbjct 2095 CCTCCAC 2089 >seq203896 Length=2920 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 2265 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 2206 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 2205 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 2147 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 2146 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 2087 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 2086 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 2027 Query 102314 ACTCCAC 102320 |||||| Sbjct 2026 CCTCCAC 2020 >seq199157 Length=2194 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 1479 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 1538 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 1539 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 1597 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 1598 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 1657 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 1658 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 1717 Query 102314 ACTCCAC 102320 |||||| Sbjct 1718 CCTCCAC 1724 >seq185390 Length=25718 Score = 84.2 bits (92), Expect = 3e-11 Identities = 367/565 (65%), Gaps = 28/565 (5%) Strand=Plus/Plus Query 15822 CGCGCGTGAACACCCAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATC 15881 || ||||| || || |||||||||||| ||| | ||| | || | |||| Sbjct 20200 CGGGCGTGGACCGACAGGATCTTCTCGCGGCCCTTGATGTCGGGGTTCGGGACATAGATC 20259 Query 15882 TTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTT 15941 | || || |||||||| ||||| || ||||| || || | || ||| || ||| Sbjct 20260 TGGCGGTCGAAGCGACCGGGGCGCAGCAGCGCCGGGTCCAGCACGTCCTTGCGGTTGGTT 20319 Query 15942 GCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGC 15998 |||||||||| | | ||| ||||| || || || ||||| || || | | Sbjct 20320 GCGGCGATGATGATGACGCCT---TCGTTGGCGTCGAAGCCGTCCATTTCCACCAGCAAC 20376 Query 15999 TGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACC-AC-CAGCACTGCGTT 16053 ||||| | || ||||| ||||| || || ||| | | || || || | || | ||| Sbjct 20377 TGGTTCAGCGTCTGTTCGCGTTCGTCGTTGCCGCCGCCGATGCCGACGCCGCGC-GCGCG 20435 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTT--GATTT--TCGCGA 16109 || | || || || ||||| || |||||||||||||| || ||||| | || Sbjct 20436 GC----CGACCGCGTCGATCTCGTCGATGAAGACGATGCAGGGGGCCGATTTCTTGGCCT 20491 Query 16110 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 16169 || || || | || || ||||| ||||| || || || |||||||| || ||| Sbjct 20492 GC----TCGAACATGTCGCGGACACGGGACGCGCCGACGCCGACGAACATCTCGACGAAG 20547 Query 16170 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 16228 | | | || || | || |||||| || | || ||||| ||||| ||||| || Sbjct 20548 TCCGAACCCGAG-ATGGTGAAGAAGGGTACGCCCGCCTCGCCCGCGATGGCGCGGGCAAG 20606 Query 16229 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||||||||||| || ||| || | || || || ||| || |||||| | || Sbjct 20607 CAGCGTCTTACCCGTCCCGGGCGGGCCGACCAGCAGCGCGCCTTTCGGGATCTTGCCCCC 20666 Query 16289 ACTTCCAAAGTATCTCT-CAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTT 16347 | | || ||| | |||||| || || || || ||||| || | || || | Sbjct 20667 CAGGCGGCTGAATTTCTGCGGGTTGC-GCAGGAACTCGACGATCTCCTCAAGCTCCTCCT 20725 Query 16348 TGGCGGCGTCAATCCCCTCAACATC 16372 |||| |||| || || | ||||| Sbjct 20726 TGGCCTCGTCGATGCCGGCGACATC 20750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619000581307040